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The map label for this gene is yebA [H]

Identifier: 167622402

GI number: 167622402

Start: 541731

End: 542630

Strand: Direct

Name: yebA [H]

Synonym: Shal_0462

Alternate gene names: 167622402

Gene position: 541731-542630 (Clockwise)

Preceding gene: 167622400

Following gene: 167622403

Centisome position: 10.36

GC content: 44.78

Gene sequence:

>900_bases
ATGAGTGTAACAGTTTTTATTCAAGGTCGAAATGGTGCCACACGCTGGCAGCCAGGAAAGCGTTGGTTGCTATTGCCGAT
TCTGCTTATTGCAGCAGGTACGGGTCTTTATCAGCACAATGCTAAGCAACTTACACAGCAACAAGCTACTGTCGATGGCG
AGCGTATGGCTCGTGAAGAACAAAAAGATGAGTTGATCGCGCTAAAGAGTGCGACAGAAACTCAACTTTCGATGTTGGTT
GCCCATGTCGCTCGTATGCAAGCTAAACTCACACGCTTAGAAGTGCTGGGTCAGCAAGTTGCTCTCAATAATCAATTAGA
AGATCAATTTGATTTCTCTTCAGAAGTCGGTGTTGGTGGTATCAGTGATTTAGGTACTAACATCGAACTCGATCAGCTTA
TCGCAGATATGGATAAGCTGGTGTCTCGAATAGATAATAATAATGTTCAGCTTTCACTACTTGAAACGGTAGCATCTAAT
CTCCATATAGATGAAGAACGTTATATATCTGGGCGACCAATCCACAAAGGTTGGTTATCCTCGCCCTATGGTTTACGTAA
TGATCCTTTCAACGGTAAAAGAACGATGCATAAAGGCATCGACTTCGCCGGAAAAGAGGGCGTCGATGTAATCGCGACAG
CTGGTGGCGTAGTTACATGGGCGGACAAGATGTTTGGTTATGGTGAGTTAGTCGAAATTGATCATGGAAATGGTCTGAGT
ACTCGTTATGGTCATAATAAAGCTTTGTCAGTAAATGTGGGCGATGTGGTCGCTAAAGGCGATAAAATCGCTGTGATGGG
AAGTACTGGGCGCTCAACAGGGCCTCATGTACACTATGAAGTGTTGCGCGGTGGACAGCAGATCGATCCGCAAAAGTATG
TCTACCGAAAGGCAGGTTAA

Upstream 100 bases:

>100_bases
CTTTTTCAGCTAAATTGGGCATAGTCCCTTGCTGATGCAGTAATTGACTGAGATCCTGAGGGGGCTTTTTCATATGATAA
TAAAATGGCTTAATTAGGCT

Downstream 100 bases:

>100_bases
TCATAAAATAGGCTTTCAGGCTCTCAAAGGGACTTGGCCAACAACATAGAAGTGGTTCAGATGTTTGGTAAATTACTGAC
AAAAGTATTTGGTAGTCGCA

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MSVTVFIQGRNGATRWQPGKRWLLLPILLIAAGTGLYQHNAKQLTQQQATVDGERMAREEQKDELIALKSATETQLSMLV
AHVARMQAKLTRLEVLGQQVALNNQLEDQFDFSSEVGVGGISDLGTNIELDQLIADMDKLVSRIDNNNVQLSLLETVASN
LHIDEERYISGRPIHKGWLSSPYGLRNDPFNGKRTMHKGIDFAGKEGVDVIATAGGVVTWADKMFGYGELVEIDHGNGLS
TRYGHNKALSVNVGDVVAKGDKIAVMGSTGRSTGPHVHYEVLRGGQQIDPQKYVYRKAG

Sequences:

>Translated_299_residues
MSVTVFIQGRNGATRWQPGKRWLLLPILLIAAGTGLYQHNAKQLTQQQATVDGERMAREEQKDELIALKSATETQLSMLV
AHVARMQAKLTRLEVLGQQVALNNQLEDQFDFSSEVGVGGISDLGTNIELDQLIADMDKLVSRIDNNNVQLSLLETVASN
LHIDEERYISGRPIHKGWLSSPYGLRNDPFNGKRTMHKGIDFAGKEGVDVIATAGGVVTWADKMFGYGELVEIDHGNGLS
TRYGHNKALSVNVGDVVAKGDKIAVMGSTGRSTGPHVHYEVLRGGQQIDPQKYVYRKAG
>Mature_298_residues
SVTVFIQGRNGATRWQPGKRWLLLPILLIAAGTGLYQHNAKQLTQQQATVDGERMAREEQKDELIALKSATETQLSMLVA
HVARMQAKLTRLEVLGQQVALNNQLEDQFDFSSEVGVGGISDLGTNIELDQLIADMDKLVSRIDNNNVQLSLLETVASNL
HIDEERYISGRPIHKGWLSSPYGLRNDPFNGKRTMHKGIDFAGKEGVDVIATAGGVVTWADKMFGYGELVEIDHGNGLST
RYGHNKALSVNVGDVVAKGDKIAVMGSTGRSTGPHVHYEVLRGGQQIDPQKYVYRKAG

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=105, Percent_Identity=41.9047619047619, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI87082297, Length=132, Percent_Identity=35.6060606060606, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1789099, Length=109, Percent_Identity=37.6146788990826, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082174, Length=121, Percent_Identity=33.8842975206612, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 32776; Mature: 32644

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTVFIQGRNGATRWQPGKRWLLLPILLIAAGTGLYQHNAKQLTQQQATVDGERMAREE
CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHH
QKDELIALKSATETQLSMLVAHVARMQAKLTRLEVLGQQVALNNQLEDQFDFSSEVGVGG
HHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC
ISDLGTNIELDQLIADMDKLVSRIDNNNVQLSLLETVASNLHIDEERYISGRPIHKGWLS
HHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCHHHCCCCCCCCCCCCC
SPYGLRNDPFNGKRTMHKGIDFAGKEGVDVIATAGGVVTWADKMFGYGELVEIDHGNGLS
CCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEECCCEEEEHHHHCCCCCEEEEECCCCCC
TRYGHNKALSVNVGDVVAKGDKIAVMGSTGRSTGPHVHYEVLRGGQQIDPQKYVYRKAG
CCCCCCEEEEEEHHHHEECCCEEEEEECCCCCCCCEEEHHHHCCCCCCCHHHHHEECCC
>Mature Secondary Structure 
SVTVFIQGRNGATRWQPGKRWLLLPILLIAAGTGLYQHNAKQLTQQQATVDGERMAREE
EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHH
QKDELIALKSATETQLSMLVAHVARMQAKLTRLEVLGQQVALNNQLEDQFDFSSEVGVGG
HHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCC
ISDLGTNIELDQLIADMDKLVSRIDNNNVQLSLLETVASNLHIDEERYISGRPIHKGWLS
HHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCHHHCCCCCCCCCCCCC
SPYGLRNDPFNGKRTMHKGIDFAGKEGVDVIATAGGVVTWADKMFGYGELVEIDHGNGLS
CCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEECCCEEEEHHHHCCCCCEEEEECCCCCC
TRYGHNKALSVNVGDVVAKGDKIAVMGSTGRSTGPHVHYEVLRGGQQIDPQKYVYRKAG
CCCCCCEEEEEEHHHHEECCCEEEEEECCCCCCCCEEEHHHHCCCCCCCHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]