| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is uxaA [H]
Identifier: 167622352
GI number: 167622352
Start: 483129
End: 484310
Strand: Direct
Name: uxaA [H]
Synonym: Shal_0412
Alternate gene names: 167622352
Gene position: 483129-484310 (Clockwise)
Preceding gene: 167622351
Following gene: 167622353
Centisome position: 9.24
GC content: 49.15
Gene sequence:
>1182_bases ATGATGAGTAGCTTTATTGGTTTTGGCCGTGCAGATGGCAGTGTGGGTATTCGTAACCATGTATTGATTATGGCGGTGGA TGAGTGTTGTGACGGCATCGCCCGTGCTATTGCCGACAGTATTGATAATGGAATCGTAGTGACCAACTACAACACCTGTA TGTATGGTGGTAACGAAGAGATGATCAACACCATGGTACATACGGGCAATAACCCGAACGTGGCCGGGGTACTCGTGTTA GCAATGGGTTGTGGCAGTATTGATCCTGAAATTGTAGCTGCGCCTATCCGCGTTAGCGGTCGTCCTGCTTTTTCACTGGT GTGTATGAAGCAACAAGGTACGCGCGCAACCATTACCCAAGGTAAGGCGTTGGCGCAAGAGCTACAGCAAGTTGCACAAG CCGCGCCTCGAATTGAAACGCCCATTTCTAAGCTAGTGATAGGGGTGAAATGTGGCGGTTCAGATACCAGCTCAGGCATC GCCTCTAATCCAAGCGTTGGCCGCGCAGTCGATAAGTTAGTCGATCTTGGCGCAACCGCGATTGCCGGTGAATTGATTGA ATTAGTCGGCTGTGAAACTATTTTACGTCAGCGCGCGGTATCGCCAGAGGTTGCTGACAAACTAGAGCGCTTAATTCATG AAGAAGAAGCGCGCTGGCACGTAGATGGCGCAGAAGTGGAAACCATGAGCATTGGTAATAGTGTTGGTGGCTTAACCACA CTAGAGGAAAAGTCTTTTGGTGCGCTGAGTAAAACTGGCACTCGTCCCATTCAAGATGTATTGCAGATAAATCATCTGGT ACATGAAAAGCCCAAGGCTGCAGGTTTCTACCTATCGGAAGCCACTCATCTATGTGGTAGTGCCGGTATGCATTTTGCCT CACTGGGCGCGCATCTGATTCTATGGACCACGGGCGGGGCAGGCTTTAATAACCCAATCGTTCCTGTTATTCGTATCAGT GGTAACCAATATCTGCTAAATGAGGATATTGATATCGACGCTTCTGGTATTATGCGAGCCGAAGAAGGCGTGGAAAGTGT CGCTGAGCGTATCGTTGCCAAAGTTGGCACTGTTGCTCAAGGCGGGCAGACTAACATTGAAGAGATTGGTTATAGCTACT GCAGCTTGTACCAGAAAGACCAACGCTTAGAGACTTTGCTGCGCTTTAAGCCCGGCTGCTAA
Upstream 100 bases:
>100_bases GTGGTGAATTAGCCCATGTGCAAAATGTGCGCAGCCAACGCTTAGATATTCCAGACAATATCATTGAAGAAATTATTAAA CAGATGCGGATTGAGCAAGC
Downstream 100 bases:
>100_bases ATGTTTAACCATTAGATTTAGTCATTAATAATGCAATGCCCTTGCTACACATAGTTGTAGCCGGGGCTTATTATCGCAGG ATGTTATGAATACAACTCAA
Product: D-galactarate dehydratase/Altronate hydrolase domain-containing protein
Products: NA
Alternate protein names: Altronic acid hydratase [H]
Number of amino acids: Translated: 393; Mature: 393
Protein sequence:
>393_residues MMSSFIGFGRADGSVGIRNHVLIMAVDECCDGIARAIADSIDNGIVVTNYNTCMYGGNEEMINTMVHTGNNPNVAGVLVL AMGCGSIDPEIVAAPIRVSGRPAFSLVCMKQQGTRATITQGKALAQELQQVAQAAPRIETPISKLVIGVKCGGSDTSSGI ASNPSVGRAVDKLVDLGATAIAGELIELVGCETILRQRAVSPEVADKLERLIHEEEARWHVDGAEVETMSIGNSVGGLTT LEEKSFGALSKTGTRPIQDVLQINHLVHEKPKAAGFYLSEATHLCGSAGMHFASLGAHLILWTTGGAGFNNPIVPVIRIS GNQYLLNEDIDIDASGIMRAEEGVESVAERIVAKVGTVAQGGQTNIEEIGYSYCSLYQKDQRLETLLRFKPGC
Sequences:
>Translated_393_residues MMSSFIGFGRADGSVGIRNHVLIMAVDECCDGIARAIADSIDNGIVVTNYNTCMYGGNEEMINTMVHTGNNPNVAGVLVL AMGCGSIDPEIVAAPIRVSGRPAFSLVCMKQQGTRATITQGKALAQELQQVAQAAPRIETPISKLVIGVKCGGSDTSSGI ASNPSVGRAVDKLVDLGATAIAGELIELVGCETILRQRAVSPEVADKLERLIHEEEARWHVDGAEVETMSIGNSVGGLTT LEEKSFGALSKTGTRPIQDVLQINHLVHEKPKAAGFYLSEATHLCGSAGMHFASLGAHLILWTTGGAGFNNPIVPVIRIS GNQYLLNEDIDIDASGIMRAEEGVESVAERIVAKVGTVAQGGQTNIEEIGYSYCSLYQKDQRLETLLRFKPGC >Mature_393_residues MMSSFIGFGRADGSVGIRNHVLIMAVDECCDGIARAIADSIDNGIVVTNYNTCMYGGNEEMINTMVHTGNNPNVAGVLVL AMGCGSIDPEIVAAPIRVSGRPAFSLVCMKQQGTRATITQGKALAQELQQVAQAAPRIETPISKLVIGVKCGGSDTSSGI ASNPSVGRAVDKLVDLGATAIAGELIELVGCETILRQRAVSPEVADKLERLIHEEEARWHVDGAEVETMSIGNSVGGLTT LEEKSFGALSKTGTRPIQDVLQINHLVHEKPKAAGFYLSEATHLCGSAGMHFASLGAHLILWTTGGAGFNNPIVPVIRIS GNQYLLNEDIDIDASGIMRAEEGVESVAERIVAKVGTVAQGGQTNIEEIGYSYCSLYQKDQRLETLLRFKPGC
Specific function: Hexuronate conversion to KDG. [C]
COG id: COG2721
COG function: function code G; Altronate dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the uxaA family [H]
Homologues:
Organism=Escherichia coli, GI1789475, Length=400, Percent_Identity=28.25, Blast_Score=133, Evalue=2e-32, Organism=Escherichia coli, GI1789516, Length=400, Percent_Identity=28.25, Blast_Score=118, Evalue=6e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007392 - InterPro: IPR013974 [H]
Pfam domain/function: PF04295 GD_AH_C; PF08666 SAF [H]
EC number: =4.2.1.7 [H]
Molecular weight: Translated: 41578; Mature: 41578
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMSSFIGFGRADGSVGIRNHVLIMAVDECCDGIARAIADSIDNGIVVTNYNTCMYGGNEE CCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCHH MINTMVHTGNNPNVAGVLVLAMGCGSIDPEIVAAPIRVSGRPAFSLVCMKQQGTRATITQ HHHHHHHCCCCCCHHHHHEEECCCCCCCCCCEEECEEECCCCCEEEEEECCCCCEEEHHH GKALAQELQQVAQAAPRIETPISKLVIGVKCGGSDTSSGIASNPSVGRAVDKLVDLGATA HHHHHHHHHHHHHHCCCCCCCHHHEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCHHH IAGELIELVGCETILRQRAVSPEVADKLERLIHEEEARWHVDGAEVETMSIGNSVGGLTT HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEECCCEEEEEECCCCCCCCEE LEEKSFGALSKTGTRPIQDVLQINHLVHEKPKAAGFYLSEATHLCGSAGMHFASLGAHLI ECCCCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCHHHHCCCEEE LWTTGGAGFNNPIVPVIRISGNQYLLNEDIDIDASGIMRAEEGVESVAERIVAKVGTVAQ EEECCCCCCCCCCEEEEEECCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC GGQTNIEEIGYSYCSLYQKDQRLETLLRFKPGC CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MMSSFIGFGRADGSVGIRNHVLIMAVDECCDGIARAIADSIDNGIVVTNYNTCMYGGNEE CCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCHH MINTMVHTGNNPNVAGVLVLAMGCGSIDPEIVAAPIRVSGRPAFSLVCMKQQGTRATITQ HHHHHHHCCCCCCHHHHHEEECCCCCCCCCCEEECEEECCCCCEEEEEECCCCCEEEHHH GKALAQELQQVAQAAPRIETPISKLVIGVKCGGSDTSSGIASNPSVGRAVDKLVDLGATA HHHHHHHHHHHHHHCCCCCCCHHHEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCHHH IAGELIELVGCETILRQRAVSPEVADKLERLIHEEEARWHVDGAEVETMSIGNSVGGLTT HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEECCCEEEEEECCCCCCCCEE LEEKSFGALSKTGTRPIQDVLQINHLVHEKPKAAGFYLSEATHLCGSAGMHFASLGAHLI ECCCCCCCHHCCCCHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCHHHHCCCEEE LWTTGGAGFNNPIVPVIRISGNQYLLNEDIDIDASGIMRAEEGVESVAERIVAKVGTVAQ EEECCCCCCCCCCEEEEEECCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC GGQTNIEEIGYSYCSLYQKDQRLETLLRFKPGC CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9579062; 9384377 [H]