| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622334
Identifier: 167622334
GI number: 167622334
Start: 461132
End: 462037
Strand: Direct
Name: 167622334
Synonym: Shal_0394
Alternate gene names: NA
Gene position: 461132-462037 (Clockwise)
Preceding gene: 167622333
Following gene: 167622335
Centisome position: 8.82
GC content: 49.12
Gene sequence:
>906_bases ATGGGTAATAACAAGCAGGATTTAACCTTAGTGATCCTTGCCGCGGGTTTAGGCAGCCGTTTTGGTGGCGACAAGCAGTT AGCGCAGCTAGGCCCAAATGGTGAAACCATGTTGGAGCTATCGATACAGAGCGCCTATAAAGCGGGCTTTTCTCGTGCGG TCTTAGTCATTCGTTCAGAATTAGCCAGCATGCTAGATGAAGCCTTAGCGGGTAAGTTTAGTGACGATTTCAGCTGCCAG TACTGCGTTCAGTCGTTAGATGATTTACCAGCGTCTGCGCGCGAATTTGCCGATGCGAGTCAGCGACAAAAACCTTGGGG CACAGCCCATGCGCTTTGGAGCGCGAGAAATCATGTTGTTGGCCCTATGGCAGTGATCAATGCCGACGATTTTTATGGCG ACAGCGCTTTTAGCTTGCTTAGCGAGGGATTATCAACGGCTAATGACGACTGGATGATGGTGGCTTATCCAATAGGCTTA ACCCTGTCTGATAATGGTGGCGTTAACCGGGGTTTATGCCAAGTTGAAGCCGGTAAGCTTATCGATGTGGCCGAGTGGCT TGATATTCGCTGTGAACCATCGGGTTTAACTGGTACGTTAGATGGAGAGCGTTTAACCATTGCCGACGATGCCGTGGTTT CGATGACTTGCTGGGGCTTCAAACCAGATATCTTCGAGGTGATTGAACAACAGTTTAGTCACTTCCTTGAACACAATGGT CATCATCCAAAAGCCGAGTGTTACTTGCCTACAGTGGTACAAGCTCGACTCGATGCCCCGTCAGATGCTCAGGCTAACAA GGTGGTAAACGTCAGTGTCGCCAAGGAATCTTGGTACGGCGTGACTTACCCTGAAGATGTGCAATGGGTTAGGCAGAAAT TGCAGCAAACTCTTTGCAGTAATTAG
Upstream 100 bases:
>100_bases TAGCGCTGGATATTAGCCTATAGACTCATTAAACTGCTTCGCCTTATCGTGATGCGAAGCCGCAACTGTCTGAGGGAGTG TCATTGTTTGAGAGAGAGTA
Downstream 100 bases:
>100_bases TTCGAAGCTAATTTAATAATCAATTTGCACGGAAAGTCTGGAGAAGAGCCCAGATAGCAAAAGAGATCTAAAAGAATAAC TGGAGTGTTGGGTGATCGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 301; Mature: 300
Protein sequence:
>301_residues MGNNKQDLTLVILAAGLGSRFGGDKQLAQLGPNGETMLELSIQSAYKAGFSRAVLVIRSELASMLDEALAGKFSDDFSCQ YCVQSLDDLPASAREFADASQRQKPWGTAHALWSARNHVVGPMAVINADDFYGDSAFSLLSEGLSTANDDWMMVAYPIGL TLSDNGGVNRGLCQVEAGKLIDVAEWLDIRCEPSGLTGTLDGERLTIADDAVVSMTCWGFKPDIFEVIEQQFSHFLEHNG HHPKAECYLPTVVQARLDAPSDAQANKVVNVSVAKESWYGVTYPEDVQWVRQKLQQTLCSN
Sequences:
>Translated_301_residues MGNNKQDLTLVILAAGLGSRFGGDKQLAQLGPNGETMLELSIQSAYKAGFSRAVLVIRSELASMLDEALAGKFSDDFSCQ YCVQSLDDLPASAREFADASQRQKPWGTAHALWSARNHVVGPMAVINADDFYGDSAFSLLSEGLSTANDDWMMVAYPIGL TLSDNGGVNRGLCQVEAGKLIDVAEWLDIRCEPSGLTGTLDGERLTIADDAVVSMTCWGFKPDIFEVIEQQFSHFLEHNG HHPKAECYLPTVVQARLDAPSDAQANKVVNVSVAKESWYGVTYPEDVQWVRQKLQQTLCSN >Mature_300_residues GNNKQDLTLVILAAGLGSRFGGDKQLAQLGPNGETMLELSIQSAYKAGFSRAVLVIRSELASMLDEALAGKFSDDFSCQY CVQSLDDLPASAREFADASQRQKPWGTAHALWSARNHVVGPMAVINADDFYGDSAFSLLSEGLSTANDDWMMVAYPIGLT LSDNGGVNRGLCQVEAGKLIDVAEWLDIRCEPSGLTGTLDGERLTIADDAVVSMTCWGFKPDIFEVIEQQFSHFLEHNGH HPKAECYLPTVVQARLDAPSDAQANKVVNVSVAKESWYGVTYPEDVQWVRQKLQQTLCSN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32798; Mature: 32667
Theoretical pI: Translated: 4.40; Mature: 4.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGNNKQDLTLVILAAGLGSRFGGDKQLAQLGPNGETMLELSIQSAYKAGFSRAVLVIRSE CCCCCCCEEEEEEEECCCCCCCCCHHHHHCCCCCCEEEEEEHHHHHHHCHHHHHHHHHHH LASMLDEALAGKFSDDFSCQYCVQSLDDLPASAREFADASQRQKPWGTAHALWSARNHVV HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC GPMAVINADDFYGDSAFSLLSEGLSTANDDWMMVAYPIGLTLSDNGGVNRGLCQVEAGKL CCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCCCEEEECCCCE IDVAEWLDIRCEPSGLTGTLDGERLTIADDAVVSMTCWGFKPDIFEVIEQQFSHFLEHNG EEHHHHHCCEECCCCCEEECCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC HHPKAECYLPTVVQARLDAPSDAQANKVVNVSVAKESWYGVTYPEDVQWVRQKLQQTLCS CCCCCCEECHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCC N C >Mature Secondary Structure GNNKQDLTLVILAAGLGSRFGGDKQLAQLGPNGETMLELSIQSAYKAGFSRAVLVIRSE CCCCCCEEEEEEEECCCCCCCCCHHHHHCCCCCCEEEEEEHHHHHHHCHHHHHHHHHHH LASMLDEALAGKFSDDFSCQYCVQSLDDLPASAREFADASQRQKPWGTAHALWSARNHVV HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC GPMAVINADDFYGDSAFSLLSEGLSTANDDWMMVAYPIGLTLSDNGGVNRGLCQVEAGKL CCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCCCEEEECCCCE IDVAEWLDIRCEPSGLTGTLDGERLTIADDAVVSMTCWGFKPDIFEVIEQQFSHFLEHNG EEHHHHHCCEECCCCCEEECCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC HHPKAECYLPTVVQARLDAPSDAQANKVVNVSVAKESWYGVTYPEDVQWVRQKLQQTLCS CCCCCCEECHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCC N C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA