| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is menC [H]
Identifier: 167622236
GI number: 167622236
Start: 354351
End: 355412
Strand: Reverse
Name: menC [H]
Synonym: Shal_0295
Alternate gene names: 167622236
Gene position: 355412-354351 (Counterclockwise)
Preceding gene: 167622237
Following gene: 167622235
Centisome position: 6.8
GC content: 49.72
Gene sequence:
>1062_bases ATGACCGCGACTCTACAGCAAGCAAAGCCATTAACCTTAGCTAGGTTAGGTCTGTATCAGTTTGCTATCGATTTAGATAA GCCGCTGCCTGTAGGCAAGCAACGCATAGAACAGCGCCGTGGACTCGTGCTGGTAGCACAGACCCAAGAGCGACAAGAAT GGGTAGAGATCTCGCCGCTTTGTGGTGTCGATAACCAAGGTGAAACGATTTCAGGCTTTAGCCAAGAGACGCTCGAGGGG GTGAGCCAGCAGCTACTGAATTTACTGCCAGAACTACAGCAGCAGCCTATCGATTGTTTATTAACGCTTGCCGAGCAGAG CAAGCTGCCGTCATTAGCCTATGGTTTGAGCCTAATGCATGCCAAGCTAATGGGTAAGCTCGACGGACACACATTAACTG CGCGCACAGTGCCACTTATCTATCGCCAAGCTGATGAGTCTCTTAGCCTTGTGGCTAACAGAGTTAGCGCGCTGCCTGAG ACCATACTTTCAGTCAAAGTGAAAGTGGCTCAAGACTCATTAAAGGATGAGCTGCAGCTAATCCATCATATCTTAGCGAT TCGCCCTAAGCTCAAGCTGCGCCTAGACGCTAACCGTGGCTTTAGCCTAGAGCAGGCTATCGAGTTTGCCGCCTGTGTGC CACTCGACAGCATCGAGTACATCGAAGAACCTTGTCAAAATCCTCAAGACAACCGTGCTTTCTATCAAGCCATTAAGATG CCTTGGGCGCTGGATGAGTCACTCAACAGTCCAGATTATCAATTTTCAATGCAGTCAGGGCTAAGCGCACTCATCATCAA GCCAACCCTGTTAGGCAGCCTCGAAAAACTACAGCAGCTGATTGATACCGCAGCAGAGCATGGCGTACGCACTGTTTTGA GTTCAAGTTTAGAGGCAAGCTTAGGTATTGAGGCCATAAGCCGACTGGCACAGATCTTCACACCCGACGAAACTCCCGGT ATAGATACACTCGGCGCCTTTAGCCAAGATCTGCTGGTGAGTTCAGGTAAAGAGTACTGCCTAAAGCTTGAAGAGTTAAC GCCGCTACTCGAACTAAGCTAG
Upstream 100 bases:
>100_bases TGGCCATAACGTACATCTGGCAGCTCCCGAGGCTTTTGCAGAGCAACTCAAAACCATTTTTGCATCGAACTCTAACTTCT AACTAGACAGTGAGCACTCC
Downstream 100 bases:
>100_bases ATTAGGCTAGGTTTGGTTAGATTAGGCTAGGTTTGGTTAGATTAGACTAGATGTGGCTAACATAAGACTAGAGTCGTAAT AGCCTAGGTGGCGATACCCT
Product: O-succinylbenzoate synthase
Products: NA
Alternate protein names: OSB synthase; OSBS; 4-(2'-carboxyphenyl)-4-oxybutyric acid synthase; o-succinylbenzoic acid synthase [H]
Number of amino acids: Translated: 353; Mature: 352
Protein sequence:
>353_residues MTATLQQAKPLTLARLGLYQFAIDLDKPLPVGKQRIEQRRGLVLVAQTQERQEWVEISPLCGVDNQGETISGFSQETLEG VSQQLLNLLPELQQQPIDCLLTLAEQSKLPSLAYGLSLMHAKLMGKLDGHTLTARTVPLIYRQADESLSLVANRVSALPE TILSVKVKVAQDSLKDELQLIHHILAIRPKLKLRLDANRGFSLEQAIEFAACVPLDSIEYIEEPCQNPQDNRAFYQAIKM PWALDESLNSPDYQFSMQSGLSALIIKPTLLGSLEKLQQLIDTAAEHGVRTVLSSSLEASLGIEAISRLAQIFTPDETPG IDTLGAFSQDLLVSSGKEYCLKLEELTPLLELS
Sequences:
>Translated_353_residues MTATLQQAKPLTLARLGLYQFAIDLDKPLPVGKQRIEQRRGLVLVAQTQERQEWVEISPLCGVDNQGETISGFSQETLEG VSQQLLNLLPELQQQPIDCLLTLAEQSKLPSLAYGLSLMHAKLMGKLDGHTLTARTVPLIYRQADESLSLVANRVSALPE TILSVKVKVAQDSLKDELQLIHHILAIRPKLKLRLDANRGFSLEQAIEFAACVPLDSIEYIEEPCQNPQDNRAFYQAIKM PWALDESLNSPDYQFSMQSGLSALIIKPTLLGSLEKLQQLIDTAAEHGVRTVLSSSLEASLGIEAISRLAQIFTPDETPG IDTLGAFSQDLLVSSGKEYCLKLEELTPLLELS >Mature_352_residues TATLQQAKPLTLARLGLYQFAIDLDKPLPVGKQRIEQRRGLVLVAQTQERQEWVEISPLCGVDNQGETISGFSQETLEGV SQQLLNLLPELQQQPIDCLLTLAEQSKLPSLAYGLSLMHAKLMGKLDGHTLTARTVPLIYRQADESLSLVANRVSALPET ILSVKVKVAQDSLKDELQLIHHILAIRPKLKLRLDANRGFSLEQAIEFAACVPLDSIEYIEEPCQNPQDNRAFYQAIKMP WALDESLNSPDYQFSMQSGLSALIIKPTLLGSLEKLQQLIDTAAEHGVRTVLSSSLEASLGIEAISRLAQIFTPDETPGI DTLGAFSQDLLVSSGKEYCLKLEELTPLLELS
Specific function: Converts SHCHC to OSB [H]
COG id: COG1441
COG function: function code H; O-succinylbenzoate synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family. MenC type 1 subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788596, Length=311, Percent_Identity=35.048231511254, Blast_Score=162, Evalue=4e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013342 - InterPro: IPR010196 [H]
Pfam domain/function: PF01188 MR_MLE [H]
EC number: =4.2.1.113 [H]
Molecular weight: Translated: 38948; Mature: 38817
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: PS00909 MR_MLE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTATLQQAKPLTLARLGLYQFAIDLDKPLPVGKQRIEQRRGLVLVAQTQERQEWVEISPL CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCEEEEECCCCHHHHHEECCC CGVDNQGETISGFSQETLEGVSQQLLNLLPELQQQPIDCLLTLAEQSKLPSLAYGLSLMH CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHH AKLMGKLDGHTLTARTVPLIYRQADESLSLVANRVSALPETILSVKVKVAQDSLKDELQL HHHHHHCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IHHILAIRPKLKLRLDANRGFSLEQAIEFAACVPLDSIEYIEEPCQNPQDNRAFYQAIKM HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHC PWALDESLNSPDYQFSMQSGLSALIIKPTLLGSLEKLQQLIDTAAEHGVRTVLSSSLEAS CHHHHHCCCCCCCEEEHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGIEAISRLAQIFTPDETPGIDTLGAFSQDLLVSSGKEYCLKLEELTPLLELS HCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCHHHCCC >Mature Secondary Structure TATLQQAKPLTLARLGLYQFAIDLDKPLPVGKQRIEQRRGLVLVAQTQERQEWVEISPL CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCEEEEECCCCHHHHHEECCC CGVDNQGETISGFSQETLEGVSQQLLNLLPELQQQPIDCLLTLAEQSKLPSLAYGLSLMH CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHH AKLMGKLDGHTLTARTVPLIYRQADESLSLVANRVSALPETILSVKVKVAQDSLKDELQL HHHHHHCCCCEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IHHILAIRPKLKLRLDANRGFSLEQAIEFAACVPLDSIEYIEEPCQNPQDNRAFYQAIKM HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHC PWALDESLNSPDYQFSMQSGLSALIIKPTLLGSLEKLQQLIDTAAEHGVRTVLSSSLEAS CHHHHHCCCCCCCEEEHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGIEAISRLAQIFTPDETPGIDTLGAFSQDLLVSSGKEYCLKLEELTPLLELS HCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA