| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622211
Identifier: 167622211
GI number: 167622211
Start: 323040
End: 324341
Strand: Direct
Name: 167622211
Synonym: Shal_0270
Alternate gene names: NA
Gene position: 323040-324341 (Clockwise)
Preceding gene: 167622210
Following gene: 167622212
Centisome position: 6.18
GC content: 46.93
Gene sequence:
>1302_bases ATGGGGAAAGGATGTTGCAGTAAGCTAATCGATAGATTTTTGCTAAGGCGTAAGAGCAATTGCCTAGCCTATCTTGTTGG ACTCTGCAGTTTGCCTCTTTCTCTAGCGGCTGCTGAATTGCAGCATCACGGCCATCTTAAGTATGAATATGATGGCTATG CATTTTCAGACTCGAGTGTTTACCAAGCACGTTATGGTCAGCATCAAGTTAATCAAACCGCGCAGCTTCGTTATCACTTA GGCAGTCGCTGGCAATCGGGCTGGCTAGTCGAAGTCGATTATCAACTGCTGGCTGGATATGGAGAACATCGCTTTCAAGC GACGCCATTGATGAATGGTTATTTGGGGTTAAGCTCGGTGATTGACGATGAGCTGCGACTGTTTAATCTTACCAATACAC TCTCGGAGCATCGAGACTTTGTGATGCTTCAGCGCTTAGATAGAGCCATTGTCGGCTATCAGACGGATAACAATGTCGTT AAGTTTGGCCGGCAGGCGATCACTTGGGGCAATGGTCAATTTTTTAATCCGATGGATTTCGTTAATCCGTTTGACCCCGC CTCCCTCGACAAGGAGTATAAAACCGGCGATGACATGGTGTATGGTCAGCACCTTCTGCAAGATGGCAGCGATCTACAGG CAGCCTATGTTATTCGCCGAGACGGTGATTCAGATATCACCGCCGATGTCGCCACTCTAGCGCTTAAATATCATGGATTT ATTGATTATATATATGAGTATGACCTATTGCTGGCCGAGCATTATGACAATACTGTCGCAGGCGTCTCTAGCATAATCAG TGTTGGCGGAGCTATTTGGGCAACGGATCTGGTCGCTACCTGGGGTGAGACAAATTATCTCTCTCTGGTGAGTAACTGGG GTTACTCCTGGGTTGGCTTCGAGCGCAATATGAGCGGAACCTTAGAATATTTCTATAACGGCCTCGGCATTAGCGATGGA GACTATAGTCCCGAGTCCTTGTTACAACATCCTGAGCTGGTGGCAAAGATAGAGCGGGGTGAACTGTATAACCTAGCGCG GCACTATCTTACCGGTAGCCTTTATATCGAGATGACGCCACTTTGGTCGGTATCGCAAAACCTTTTTTATAATGCATCGG ATAATTCGGCGCTGTATCAGGTGCTTAGTCAGAACAGTTTGAGTGATGAGCTTCGCTTAACCACGGCGCTAACCGTGCCT ATTGGGGCGAATGGTACCGAATATGGTGGGCTAAAGTTTAGTGACGGTCAGTACTTTAGCTTCGAGTTATTACTATATGC GCAACTCGCTTGGTATTTTTAA
Upstream 100 bases:
>100_bases AATCGCCACCCATGATGCGCAGGTGTTTGATTATTGTCGGCGTCATATCTATATGGTTGACGGTAAAATAGTCACTGATT CAACGAGTTGAGGTAGAACG
Downstream 100 bases:
>100_bases CGTCGCAGCTTACTAATCAGGATAGCTTGAGATAAGTTAAGTTTGATTTTATTTAGCTCTAGATGTGAGCTTAGATTAAG AGGGAATGAACGAGATTTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 433; Mature: 432
Protein sequence:
>433_residues MGKGCCSKLIDRFLLRRKSNCLAYLVGLCSLPLSLAAAELQHHGHLKYEYDGYAFSDSSVYQARYGQHQVNQTAQLRYHL GSRWQSGWLVEVDYQLLAGYGEHRFQATPLMNGYLGLSSVIDDELRLFNLTNTLSEHRDFVMLQRLDRAIVGYQTDNNVV KFGRQAITWGNGQFFNPMDFVNPFDPASLDKEYKTGDDMVYGQHLLQDGSDLQAAYVIRRDGDSDITADVATLALKYHGF IDYIYEYDLLLAEHYDNTVAGVSSIISVGGAIWATDLVATWGETNYLSLVSNWGYSWVGFERNMSGTLEYFYNGLGISDG DYSPESLLQHPELVAKIERGELYNLARHYLTGSLYIEMTPLWSVSQNLFYNASDNSALYQVLSQNSLSDELRLTTALTVP IGANGTEYGGLKFSDGQYFSFELLLYAQLAWYF
Sequences:
>Translated_433_residues MGKGCCSKLIDRFLLRRKSNCLAYLVGLCSLPLSLAAAELQHHGHLKYEYDGYAFSDSSVYQARYGQHQVNQTAQLRYHL GSRWQSGWLVEVDYQLLAGYGEHRFQATPLMNGYLGLSSVIDDELRLFNLTNTLSEHRDFVMLQRLDRAIVGYQTDNNVV KFGRQAITWGNGQFFNPMDFVNPFDPASLDKEYKTGDDMVYGQHLLQDGSDLQAAYVIRRDGDSDITADVATLALKYHGF IDYIYEYDLLLAEHYDNTVAGVSSIISVGGAIWATDLVATWGETNYLSLVSNWGYSWVGFERNMSGTLEYFYNGLGISDG DYSPESLLQHPELVAKIERGELYNLARHYLTGSLYIEMTPLWSVSQNLFYNASDNSALYQVLSQNSLSDELRLTTALTVP IGANGTEYGGLKFSDGQYFSFELLLYAQLAWYF >Mature_432_residues GKGCCSKLIDRFLLRRKSNCLAYLVGLCSLPLSLAAAELQHHGHLKYEYDGYAFSDSSVYQARYGQHQVNQTAQLRYHLG SRWQSGWLVEVDYQLLAGYGEHRFQATPLMNGYLGLSSVIDDELRLFNLTNTLSEHRDFVMLQRLDRAIVGYQTDNNVVK FGRQAITWGNGQFFNPMDFVNPFDPASLDKEYKTGDDMVYGQHLLQDGSDLQAAYVIRRDGDSDITADVATLALKYHGFI DYIYEYDLLLAEHYDNTVAGVSSIISVGGAIWATDLVATWGETNYLSLVSNWGYSWVGFERNMSGTLEYFYNGLGISDGD YSPESLLQHPELVAKIERGELYNLARHYLTGSLYIEMTPLWSVSQNLFYNASDNSALYQVLSQNSLSDELRLTTALTVPI GANGTEYGGLKFSDGQYFSFELLLYAQLAWYF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48930; Mature: 48799
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKGCCSKLIDRFLLRRKSNCLAYLVGLCSLPLSLAAAELQHHGHLKYEYDGYAFSDSSV CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEECCCCH YQARYGQHQVNQTAQLRYHLGSRWQSGWLVEVDYQLLAGYGEHRFQATPLMNGYLGLSSV HHHHCCHHHHCHHHHHHHHHCCCCCCCCEEEECHHHHCCCCCCCEEECCCCCCHHHHHHH IDDELRLFNLTNTLSEHRDFVMLQRLDRAIVGYQTDNNVVKFGRQAITWGNGQFFNPMDF HHHHHHEEHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHCCCEEEECCCCCCCCHHC VNPFDPASLDKEYKTGDDMVYGQHLLQDGSDLQAAYVIRRDGDSDITADVATLALKYHGF CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH IDYIYEYDLLLAEHYDNTVAGVSSIISVGGAIWATDLVATWGETNYLSLVSNWGYSWVGF HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEHHHHCCCCEEEEE ERNMSGTLEYFYNGLGISDGDYSPESLLQHPELVAKIERGELYNLARHYLTGSLYIEMTP CCCCCHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHCCHHHHHHHHHHCCEEEEEECC LWSVSQNLFYNASDNSALYQVLSQNSLSDELRLTTALTVPIGANGTEYGGLKFSDGQYFS CHHCCCCEEEECCCCHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCCEEECCCCEEE FELLLYAQLAWYF HHHHHHHHHHHCC >Mature Secondary Structure GKGCCSKLIDRFLLRRKSNCLAYLVGLCSLPLSLAAAELQHHGHLKYEYDGYAFSDSSV CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEECCCCH YQARYGQHQVNQTAQLRYHLGSRWQSGWLVEVDYQLLAGYGEHRFQATPLMNGYLGLSSV HHHHCCHHHHCHHHHHHHHHCCCCCCCCEEEECHHHHCCCCCCCEEECCCCCCHHHHHHH IDDELRLFNLTNTLSEHRDFVMLQRLDRAIVGYQTDNNVVKFGRQAITWGNGQFFNPMDF HHHHHHEEHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHCCCEEEECCCCCCCCHHC VNPFDPASLDKEYKTGDDMVYGQHLLQDGSDLQAAYVIRRDGDSDITADVATLALKYHGF CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH IDYIYEYDLLLAEHYDNTVAGVSSIISVGGAIWATDLVATWGETNYLSLVSNWGYSWVGF HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEHHHHCCCCEEEEE ERNMSGTLEYFYNGLGISDGDYSPESLLQHPELVAKIERGELYNLARHYLTGSLYIEMTP CCCCCHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHCCHHHHHHHHHHCCEEEEEECC LWSVSQNLFYNASDNSALYQVLSQNSLSDELRLTTALTVPIGANGTEYGGLKFSDGQYFS CHHCCCCEEEECCCCHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCCEEECCCCEEE FELLLYAQLAWYF HHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA