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The map label for this gene is rbsC [H]

Identifier: 167622204

GI number: 167622204

Start: 314572

End: 315570

Strand: Reverse

Name: rbsC [H]

Synonym: Shal_0263

Alternate gene names: 167622204

Gene position: 315570-314572 (Counterclockwise)

Preceding gene: 167622205

Following gene: 167622203

Centisome position: 6.04

GC content: 48.05

Gene sequence:

>999_bases
ATGCTTAGTCTGCACAAAGATTCTTTCTACTCCCTGTTTAAGCAGCATGAGTTTTATTTAAGCTTATTAATCGCCTTGTT
GATCCTAGGTTTATCTGTGGCCACAGAAGACTTTATGACACTGGGCAATATCTTCGATATGACGGTCAGCTCGGCAATTC
TTGGCATCATGGCCTGTGGCCTGTTTGTGGTATTAATTGCTGGCGGTATCGATATCTCTTTCCCTGCCATCGCCGCCATT
GGGCAATACCTTATGGCCACTTTTGTGCTTGCAAACGGCGGTAATTTTGCCATCGCTTTTGCCATAGCAGCACTGACGGG
TATCGCCCTAGGCATGGTCAATGCGGTGTTGGTATATAAACTAAAAGCTCCAGCGATTATCATCACCATCGCCATGCTCA
ACGTCTATTTTGGTCTACTTATCTATTTCAGTAATGGTGAGTGGCTATACGGCTTTCCCGATTGGTTTATGGATGGCGTC
GAGGTACTGCGTTTCACTGCCAGCGATGGCTATGACTATGGCCTGAACTTACCCATGATGACCCTATTGGCCGTTATCGC
ATTGACCTCCATATTGATGAATAAAACCCGTATCGGTCGGCAAATTTACGCCATGGGTGGCAATAGCGACGCAGCCAGCC
GTATCGGTATCAATGGCTTTGGTCTTAACCTGTTTGTTTACGGTTATATGGGCGCGATGGCGGGTATTGCCGCCGTGGTG
CAAACTCAAATTACTCAGTCGGTAGCGCCGAACTCGTTAATGGGCTTTGAGCTGACTGTACTCGCCGCGGTAGTTTTGGG
AGGCACGAGTATGAGTGGTGGTAAAGGCACTTTACTCGGGGTCATTCTCGGTGTCGTACTGTTGGCGGTTCTCAAAAATG
GTCTAACTCTACTGGGTGTGCCCTCATATTGGCATACGGTCGTCACTGGCCTGATTATTCTTATCAGCATTAGCATGACG
GCGCTGAACGAAAAACAACAAGCTAAGCAGGTGGCCTGA

Upstream 100 bases:

>100_bases
TTTTATAACAGCCACCGAGTTATCGTGATGAAAGAGGGCCGTTTTACCCATGAGTTTTCACCCTCATCTTGTACTCAGCA
GCAGATAATGGAGGCCGTTA

Downstream 100 bases:

>100_bases
TGGACGCATTAATGAACACTTTAAAACTGCCAACGGACCGTAATATTCGTTATCTACTGATGATCTTGGCGGCCATTATG
GCACTGATGGCCTTTAGTCT

Product: monosaccharide-transporting ATPase

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MLSLHKDSFYSLFKQHEFYLSLLIALLILGLSVATEDFMTLGNIFDMTVSSAILGIMACGLFVVLIAGGIDISFPAIAAI
GQYLMATFVLANGGNFAIAFAIAALTGIALGMVNAVLVYKLKAPAIIITIAMLNVYFGLLIYFSNGEWLYGFPDWFMDGV
EVLRFTASDGYDYGLNLPMMTLLAVIALTSILMNKTRIGRQIYAMGGNSDAASRIGINGFGLNLFVYGYMGAMAGIAAVV
QTQITQSVAPNSLMGFELTVLAAVVLGGTSMSGGKGTLLGVILGVVLLAVLKNGLTLLGVPSYWHTVVTGLIILISISMT
ALNEKQQAKQVA

Sequences:

>Translated_332_residues
MLSLHKDSFYSLFKQHEFYLSLLIALLILGLSVATEDFMTLGNIFDMTVSSAILGIMACGLFVVLIAGGIDISFPAIAAI
GQYLMATFVLANGGNFAIAFAIAALTGIALGMVNAVLVYKLKAPAIIITIAMLNVYFGLLIYFSNGEWLYGFPDWFMDGV
EVLRFTASDGYDYGLNLPMMTLLAVIALTSILMNKTRIGRQIYAMGGNSDAASRIGINGFGLNLFVYGYMGAMAGIAAVV
QTQITQSVAPNSLMGFELTVLAAVVLGGTSMSGGKGTLLGVILGVVLLAVLKNGLTLLGVPSYWHTVVTGLIILISISMT
ALNEKQQAKQVA
>Mature_332_residues
MLSLHKDSFYSLFKQHEFYLSLLIALLILGLSVATEDFMTLGNIFDMTVSSAILGIMACGLFVVLIAGGIDISFPAIAAI
GQYLMATFVLANGGNFAIAFAIAALTGIALGMVNAVLVYKLKAPAIIITIAMLNVYFGLLIYFSNGEWLYGFPDWFMDGV
EVLRFTASDGYDYGLNLPMMTLLAVIALTSILMNKTRIGRQIYAMGGNSDAASRIGINGFGLNLFVYGYMGAMAGIAAVV
QTQITQSVAPNSLMGFELTVLAAVVLGGTSMSGGKGTLLGVILGVVLLAVLKNGLTLLGVPSYWHTVVTGLIILISISMT
ALNEKQQAKQVA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=313, Percent_Identity=34.185303514377, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1790524, Length=323, Percent_Identity=32.1981424148607, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1788896, Length=324, Percent_Identity=29.0123456790123, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI145693152, Length=327, Percent_Identity=28.7461773700306, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87082395, Length=293, Percent_Identity=30.0341296928328, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1789992, Length=136, Percent_Identity=34.5588235294118, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787793, Length=273, Percent_Identity=31.8681318681319, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787794, Length=326, Percent_Identity=27.6073619631902, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788471, Length=346, Percent_Identity=28.0346820809249, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI145693214, Length=277, Percent_Identity=28.8808664259928, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35147; Mature: 35147

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLHKDSFYSLFKQHEFYLSLLIALLILGLSVATEDFMTLGNIFDMTVSSAILGIMACG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFVVLIAGGIDISFPAIAAIGQYLMATFVLANGGNFAIAFAIAALTGIALGMVNAVLVYK
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LKAPAIIITIAMLNVYFGLLIYFSNGEWLYGFPDWFMDGVEVLRFTASDGYDYGLNLPMM
CCCCHHHHHHHHHHHHHHHHEEECCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHH
TLLAVIALTSILMNKTRIGRQIYAMGGNSDAASRIGINGFGLNLFVYGYMGAMAGIAAVV
HHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
QTQITQSVAPNSLMGFELTVLAAVVLGGTSMSGGKGTLLGVILGVVLLAVLKNGLTLLGV
HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEC
PSYWHTVVTGLIILISISMTALNEKQQAKQVA
CHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCC
>Mature Secondary Structure
MLSLHKDSFYSLFKQHEFYLSLLIALLILGLSVATEDFMTLGNIFDMTVSSAILGIMACG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFVVLIAGGIDISFPAIAAIGQYLMATFVLANGGNFAIAFAIAALTGIALGMVNAVLVYK
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LKAPAIIITIAMLNVYFGLLIYFSNGEWLYGFPDWFMDGVEVLRFTASDGYDYGLNLPMM
CCCCHHHHHHHHHHHHHHHHEEECCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCHHH
TLLAVIALTSILMNKTRIGRQIYAMGGNSDAASRIGINGFGLNLFVYGYMGAMAGIAAVV
HHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
QTQITQSVAPNSLMGFELTVLAAVVLGGTSMSGGKGTLLGVILGVVLLAVLKNGLTLLGV
HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEC
PSYWHTVVTGLIILISISMTALNEKQQAKQVA
CHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]