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The map label for this gene is rbsC [H]

Identifier: 167622203

GI number: 167622203

Start: 313613

End: 314572

Strand: Reverse

Name: rbsC [H]

Synonym: Shal_0262

Alternate gene names: 167622203

Gene position: 314572-313613 (Counterclockwise)

Preceding gene: 167622204

Following gene: 167622202

Centisome position: 6.02

GC content: 47.81

Gene sequence:

>960_bases
ATGGACGCATTAATGAACACTTTAAAACTGCCAACGGACCGTAATATTCGTTATCTACTGATGATCTTGGCGGCCATTAT
GGCACTGATGGCCTTTAGTCTGGGAGGGACCTTTTTCTCACTGACTAACCTGCAGTCCATGTCATCGCAATTGCCGTTGC
TGGGTATTTTTGCCTTAGCGATGGCGGTATGCATGCTGACTGGTGGTATTAATCTCTCTATTATTGCCACCACCAATGCC
TGCTCTTTGGTAATGGCCAGTATCATCACCCTAGCGCCTGACAGTAGTTTGATGTTAATGGCGGCGCTGGCTGCGGGTCT
TGTCACGGCGGTGATAGTCGGTCTGGCAAACGGGTTTTTAATTGCCTATATCGGCGTGTCGCCTATTTTGGCCACTTTAG
GCATGATGACCTTTATCAATGGCCTAAATGTATTGGTGTCTGGTGGCAGCGTGATCTCAGGTTTTCCCGATGCGTTACTA
CTCTTGGGTAATGGCGATATTTTAGGCGTGCCGATGCCGCTGATATTCTTCGCTCTGTTCGCTATTGGGCTGTGGGTGAT
CCTTGAGCACACGCCGCTTGGACGTGCGATTTACCTGATTGGATCCAACGAAAAGGCCAGCCGTTTCTCAGGCATTAACA
CTCAGAAATCTCTGGTGTATGTCTATATCATCTCATCGATTTTATGTTGGCTTGCCGCCATTATTATGATGGCGAAATTC
AACTCGGCTAAAGCCGGTTATGGCGAGTCCTATCTCTTGGTTGCTATCTTGGCTTCTGTGCTGGGAGGGATTAACCCAGA
TGGTGGATTCGGCCGCATTATCGGTATCTTCTTAGCGTTATTGGTATTACAGGCGCTGGAAAGTGGATTGAACTTACTTG
GGGTGAGCAGTTATCTCACTATGGCGCTGTGGGGCGGCATTCTCATTGTTTTCATTGCCCTACAAAAGTACAAATCATAG

Upstream 100 bases:

>100_bases
TGCCCTCATATTGGCATACGGTCGTCACTGGCCTGATTATTCTTATCAGCATTAGCATGACGGCGCTGAACGAAAAACAA
CAAGCTAAGCAGGTGGCCTG

Downstream 100 bases:

>100_bases
GAGCGAATATGAGCAGTTATTTTATCGGTGTAGATGTGGGTAGCGGCAGTGCCCGCGCTGGCGTATTTGACAGCCAAGGC
CGTAAGGCTGGCGAGGCCAA

Product: monosaccharide-transporting ATPase

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MDALMNTLKLPTDRNIRYLLMILAAIMALMAFSLGGTFFSLTNLQSMSSQLPLLGIFALAMAVCMLTGGINLSIIATTNA
CSLVMASIITLAPDSSLMLMAALAAGLVTAVIVGLANGFLIAYIGVSPILATLGMMTFINGLNVLVSGGSVISGFPDALL
LLGNGDILGVPMPLIFFALFAIGLWVILEHTPLGRAIYLIGSNEKASRFSGINTQKSLVYVYIISSILCWLAAIIMMAKF
NSAKAGYGESYLLVAILASVLGGINPDGGFGRIIGIFLALLVLQALESGLNLLGVSSYLTMALWGGILIVFIALQKYKS

Sequences:

>Translated_319_residues
MDALMNTLKLPTDRNIRYLLMILAAIMALMAFSLGGTFFSLTNLQSMSSQLPLLGIFALAMAVCMLTGGINLSIIATTNA
CSLVMASIITLAPDSSLMLMAALAAGLVTAVIVGLANGFLIAYIGVSPILATLGMMTFINGLNVLVSGGSVISGFPDALL
LLGNGDILGVPMPLIFFALFAIGLWVILEHTPLGRAIYLIGSNEKASRFSGINTQKSLVYVYIISSILCWLAAIIMMAKF
NSAKAGYGESYLLVAILASVLGGINPDGGFGRIIGIFLALLVLQALESGLNLLGVSSYLTMALWGGILIVFIALQKYKS
>Mature_319_residues
MDALMNTLKLPTDRNIRYLLMILAAIMALMAFSLGGTFFSLTNLQSMSSQLPLLGIFALAMAVCMLTGGINLSIIATTNA
CSLVMASIITLAPDSSLMLMAALAAGLVTAVIVGLANGFLIAYIGVSPILATLGMMTFINGLNVLVSGGSVISGFPDALL
LLGNGDILGVPMPLIFFALFAIGLWVILEHTPLGRAIYLIGSNEKASRFSGINTQKSLVYVYIISSILCWLAAIIMMAKF
NSAKAGYGESYLLVAILASVLGGINPDGGFGRIIGIFLALLVLQALESGLNLLGVSSYLTMALWGGILIVFIALQKYKS

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=286, Percent_Identity=38.1118881118881, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787794, Length=308, Percent_Identity=32.1428571428571, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1790524, Length=298, Percent_Identity=27.8523489932886, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI145693152, Length=283, Percent_Identity=28.2685512367491, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1788896, Length=307, Percent_Identity=27.3615635179153, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788471, Length=297, Percent_Identity=30.6397306397306, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI145693214, Length=240, Percent_Identity=30, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082395, Length=272, Percent_Identity=29.7794117647059, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787793, Length=269, Percent_Identity=28.6245353159851, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789992, Length=127, Percent_Identity=28.3464566929134, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33444; Mature: 33444

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALMNTLKLPTDRNIRYLLMILAAIMALMAFSLGGTFFSLTNLQSMSSQLPLLGIFALA
CCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHH
MAVCMLTGGINLSIIATTNACSLVMASIITLAPDSSLMLMAALAAGLVTAVIVGLANGFL
HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHH
IAYIGVSPILATLGMMTFINGLNVLVSGGSVISGFPDALLLLGNGDILGVPMPLIFFALF
EEHHHHHHHHHHHHHHHHHHHHHHEEECCCHHCCCCCEEEEEECCCEECCCHHHHHHHHH
AIGLWVILEHTPLGRAIYLIGSNEKASRFSGINTQKSLVYVYIISSILCWLAAIIMMAKF
HHHHHHHHCCCCCCCEEEEEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
NSAKAGYGESYLLVAILASVLGGINPDGGFGRIIGIFLALLVLQALESGLNLLGVSSYLT
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
MALWGGILIVFIALQKYKS
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDALMNTLKLPTDRNIRYLLMILAAIMALMAFSLGGTFFSLTNLQSMSSQLPLLGIFALA
CCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHH
MAVCMLTGGINLSIIATTNACSLVMASIITLAPDSSLMLMAALAAGLVTAVIVGLANGFL
HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHH
IAYIGVSPILATLGMMTFINGLNVLVSGGSVISGFPDALLLLGNGDILGVPMPLIFFALF
EEHHHHHHHHHHHHHHHHHHHHHHEEECCCHHCCCCCEEEEEECCCEECCCHHHHHHHHH
AIGLWVILEHTPLGRAIYLIGSNEKASRFSGINTQKSLVYVYIISSILCWLAAIIMMAKF
HHHHHHHHCCCCCCCEEEEEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
NSAKAGYGESYLLVAILASVLGGINPDGGFGRIIGIFLALLVLQALESGLNLLGVSSYLT
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
MALWGGILIVFIALQKYKS
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]