| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is ctaE [H]
Identifier: 167622196
GI number: 167622196
Start: 304932
End: 305813
Strand: Reverse
Name: ctaE [H]
Synonym: Shal_0255
Alternate gene names: 167622196
Gene position: 305813-304932 (Counterclockwise)
Preceding gene: 167622197
Following gene: 167622195
Centisome position: 5.85
GC content: 44.56
Gene sequence:
>882_bases ATGACAACTGAACATAAGCATGATAATTATTATGTACCAGAGCAAAGCGCCTGGCCGATTATTGGTGCAGTAGGCCTCTT TCTAATTGCCTTTGGCGCAGGTAGCTATGTTTCTGAACTAAACAGCCAAGGTGGTTTTGGCGGTTATATCTTGCTGGCAG GTATTGCGGTCATTATTTTTATGATTTTTGGCTGGTTTAGAACCGTTATCGCCGAATCAATGGCAGGACTCTACTCCAAA CAGATGGACCGCTCATTTAGGCAGGGAATGAGCTGGTTTATCTTCTCTGAAGTCATGTTCTTTGCCGCCTTTTTTGGTGC ACTATTTTATGCCAGAATCATTGCGATACCTTGGCTTGGCGGCGCATCAAATAATGCCATGACCCATGAGGTGCTATGGC CAATGTTTGAAGCGGCCTGGCCTTTACTAACAACTCCAGATGGTAGTCTCACCCAAGCGATGGACTGGACAGGGCTACCG CTCTACAACACCCTAATACTTCTGACCTCTTCGATAACATTACATTTTGCTCACCTAGGGTTAGAAAAAAATAAGCGCAG CGCATTAACGGTTTGGCTAGCGATAACCATCTTACTTGGGGTTGCGTTCTTGTACCTGCAAGTTGAAGAGTATCTCCATG CCTACCAAGAGATGGGGCTGACTTTAAATTCTGGTATTTACGGTAATACTTTTTTCTTATTAACGGGCTTTCACGGCATG CACGTTACCTTAGGAACCGTATTCCTCATCGTGCTGTTTTTCAGAGTTCTCAAGGGGCACTTTACCCCCGATAAGCATTT TGCCTTTCAGGCCGGCAGTTGGTATTGGCACTTTGTTGATGTGGTTTGGCTGTGCTTATTTATCTTCGTTTATGTACTTT AA
Upstream 100 bases:
>100_bases GAATATAGAGCTGAAAATTACTCTAGCAGTAAAAGTGTTGCTGTGACTAAAACAGTAACTAAACTGCGCCTAGAGCTGCT ACAGAGCAAGGAGCAGCTAA
Downstream 100 bases:
>100_bases CGGCCATATTTAACGAGCTGAAACTCAAGAAGTAAGCCATTAGTAAGGTCTGGAGTTAGGCGTAATGACTCCAGTCCCTA ACGCCACAAACAGTAACAGC
Product: cytochrome c oxidase subunit III
Products: NA
Alternate protein names: Cytochrome aa3 subunit 3; Cytochrome c oxidase polypeptide III; Oxidase aa(3) subunit 3 [H]
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MTTEHKHDNYYVPEQSAWPIIGAVGLFLIAFGAGSYVSELNSQGGFGGYILLAGIAVIIFMIFGWFRTVIAESMAGLYSK QMDRSFRQGMSWFIFSEVMFFAAFFGALFYARIIAIPWLGGASNNAMTHEVLWPMFEAAWPLLTTPDGSLTQAMDWTGLP LYNTLILLTSSITLHFAHLGLEKNKRSALTVWLAITILLGVAFLYLQVEEYLHAYQEMGLTLNSGIYGNTFFLLTGFHGM HVTLGTVFLIVLFFRVLKGHFTPDKHFAFQAGSWYWHFVDVVWLCLFIFVYVL
Sequences:
>Translated_293_residues MTTEHKHDNYYVPEQSAWPIIGAVGLFLIAFGAGSYVSELNSQGGFGGYILLAGIAVIIFMIFGWFRTVIAESMAGLYSK QMDRSFRQGMSWFIFSEVMFFAAFFGALFYARIIAIPWLGGASNNAMTHEVLWPMFEAAWPLLTTPDGSLTQAMDWTGLP LYNTLILLTSSITLHFAHLGLEKNKRSALTVWLAITILLGVAFLYLQVEEYLHAYQEMGLTLNSGIYGNTFFLLTGFHGM HVTLGTVFLIVLFFRVLKGHFTPDKHFAFQAGSWYWHFVDVVWLCLFIFVYVL >Mature_292_residues TTEHKHDNYYVPEQSAWPIIGAVGLFLIAFGAGSYVSELNSQGGFGGYILLAGIAVIIFMIFGWFRTVIAESMAGLYSKQ MDRSFRQGMSWFIFSEVMFFAAFFGALFYARIIAIPWLGGASNNAMTHEVLWPMFEAAWPLLTTPDGSLTQAMDWTGLPL YNTLILLTSSITLHFAHLGLEKNKRSALTVWLAITILLGVAFLYLQVEEYLHAYQEMGLTLNSGIYGNTFFLLTGFHGMH VTLGTVFLIVLFFRVLKGHFTPDKHFAFQAGSWYWHFVDVVWLCLFIFVYVL
Specific function: Cytochrome O Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At High Aeration. [C]
COG id: COG1845
COG function: function code C; Heme/copper-type cytochrome/quinol oxidase, subunit 3
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cytochrome c oxidase subunit 3 family [H]
Homologues:
Organism=Homo sapiens, GI251831113, Length=288, Percent_Identity=37.5, Blast_Score=152, Evalue=4e-37, Organism=Escherichia coli, GI1786633, Length=169, Percent_Identity=31.9526627218935, Blast_Score=87, Evalue=1e-18, Organism=Saccharomyces cerevisiae, GI6226542, Length=290, Percent_Identity=28.9655172413793, Blast_Score=97, Evalue=3e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000298 - InterPro: IPR013833 [H]
Pfam domain/function: PF00510 COX3 [H]
EC number: =1.9.3.1 [H]
Molecular weight: Translated: 33121; Mature: 32990
Theoretical pI: Translated: 6.58; Mature: 6.58
Prosite motif: PS50253 COX3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTEHKHDNYYVPEQSAWPIIGAVGLFLIAFGAGSYVSELNSQGGFGGYILLAGIAVIIF CCCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHH MIFGWFRTVIAESMAGLYSKQMDRSFRQGMSWFIFSEVMFFAAFFGALFYARIIAIPWLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GASNNAMTHEVLWPMFEAAWPLLTTPDGSLTQAMDWTGLPLYNTLILLTSSITLHFAHLG CCCCCCCHHHHHHHHHHHCCCCEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC LEKNKRSALTVWLAITILLGVAFLYLQVEEYLHAYQEMGLTLNSGIYGNTFFLLTGFHGM CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEEEECCCHH HVTLGTVFLIVLFFRVLKGHFTPDKHFAFQAGSWYWHFVDVVWLCLFIFVYVL HHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure TTEHKHDNYYVPEQSAWPIIGAVGLFLIAFGAGSYVSELNSQGGFGGYILLAGIAVIIF CCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHH MIFGWFRTVIAESMAGLYSKQMDRSFRQGMSWFIFSEVMFFAAFFGALFYARIIAIPWLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GASNNAMTHEVLWPMFEAAWPLLTTPDGSLTQAMDWTGLPLYNTLILLTSSITLHFAHLG CCCCCCCHHHHHHHHHHHCCCCEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC LEKNKRSALTVWLAITILLGVAFLYLQVEEYLHAYQEMGLTLNSGIYGNTFFLLTGFHGM CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEEEECCCHH HVTLGTVFLIVLFFRVLKGHFTPDKHFAFQAGSWYWHFVDVVWLCLFIFVYVL HHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 3019767; 2832167; 7651515 [H]