| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is caiD [H]
Identifier: 167622165
GI number: 167622165
Start: 271394
End: 272179
Strand: Direct
Name: caiD [H]
Synonym: Shal_0224
Alternate gene names: 167622165
Gene position: 271394-272179 (Clockwise)
Preceding gene: 167622164
Following gene: 167622166
Centisome position: 5.19
GC content: 49.36
Gene sequence:
>786_bases ATGAGTGAATCATTACACGTTACCCGCAATGGCGCTATTTTAGAAATTACTCTTGATAGACCTAAAGCCAACGCGATTGA CGCAAAAACAAGTTTTGAGATGGGTGAGGTCTTCCTCGCTTTCCGTGAAGATCCTGAACTGCGTGTGGCGATTATTACTG GTGCAGGCGAGCGCTTCTTCTCTGCAGGTTGGGATCTAAAAGCCGCTGCAGAGGGTGAAGCACCTGATGCTGACTTTGGT CCAGGCGGATTTGCGGGTTTAACTGAAATTTTTGACTTAGATAAGCCGGTTATCGCTGCGGTAAACGGTTATGCATTCGG TGGTGGTTTTGAGCTAGCGCTTGCGGCCGATATGATTATCTGCTCTGAAAATGCCAGCTTTGCCCTGCCAGAAGCTAAAT TGGGTATCGTACCTGATAGTGGCGGAATGTTGCGTCTACCTAAGTTATTACCACCTGCGATCGTCAACGAACTGATGATG ACAGGCCGTGGTATGGGCGCCGAAGAAGCCCTACGTTGGGGCGTGGTGAATCGCGTGGTTGAGAGTGACAAGCTGATGGA CAGTGCTCGTGAACTGGCTCAGCAAATTGCTCAAGGTGCGCCATTAGCTATCGCGGCGATCAAAGAGATCTATCGTGAAA CTAGCGAGCTATCGGTGGAAGAGGGTTATCGCCATATTCGTGCTGGTGGTTTGAAAAATTACCCATCGGTACTGCGTTCT GAAGATGCATTAGAAGGTCCATTAGCCTTCTCAGAGAAGCGTGACCCTGTGTGGAAGGGTAGATAG
Upstream 100 bases:
>100_bases CCTGTACCTGCAAAGTACAAAAAAAACTTCTTATGTGAAGTTAACTTAATTTAGCTTTTTAATAAAAGAGTCTGAAGTGG CTCTATATTGGAGTATTAGC
Downstream 100 bases:
>100_bases GTTTCAGTGCTATCAATCGAAATAGAGCCTGATATTTCCCATGAGATATCGGGTTTTATTTTAACTGTTTGTCGGTAATG GAAGGATTCACCAATGGCGT
Product: carnitinyl-CoA dehydratase
Products: L-Carnitine.; L-carnitinyl-CoA [C]
Alternate protein names: Crotonobetainyl-CoA hydratase [H]
Number of amino acids: Translated: 261; Mature: 260
Protein sequence:
>261_residues MSESLHVTRNGAILEITLDRPKANAIDAKTSFEMGEVFLAFREDPELRVAIITGAGERFFSAGWDLKAAAEGEAPDADFG PGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADMIICSENASFALPEAKLGIVPDSGGMLRLPKLLPPAIVNELMM TGRGMGAEEALRWGVVNRVVESDKLMDSARELAQQIAQGAPLAIAAIKEIYRETSELSVEEGYRHIRAGGLKNYPSVLRS EDALEGPLAFSEKRDPVWKGR
Sequences:
>Translated_261_residues MSESLHVTRNGAILEITLDRPKANAIDAKTSFEMGEVFLAFREDPELRVAIITGAGERFFSAGWDLKAAAEGEAPDADFG PGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADMIICSENASFALPEAKLGIVPDSGGMLRLPKLLPPAIVNELMM TGRGMGAEEALRWGVVNRVVESDKLMDSARELAQQIAQGAPLAIAAIKEIYRETSELSVEEGYRHIRAGGLKNYPSVLRS EDALEGPLAFSEKRDPVWKGR >Mature_260_residues SESLHVTRNGAILEITLDRPKANAIDAKTSFEMGEVFLAFREDPELRVAIITGAGERFFSAGWDLKAAAEGEAPDADFGP GGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADMIICSENASFALPEAKLGIVPDSGGMLRLPKLLPPAIVNELMMT GRGMGAEEALRWGVVNRVVESDKLMDSARELAQQIAQGAPLAIAAIKEIYRETSELSVEEGYRHIRAGGLKNYPSVLRSE DALEGPLAFSEKRDPVWKGR
Specific function: Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA [H]
COG id: COG1024
COG function: function code I; Enoyl-CoA hydratase/carnithine racemase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]
Homologues:
Organism=Homo sapiens, GI194097323, Length=252, Percent_Identity=33.3333333333333, Blast_Score=135, Evalue=5e-32, Organism=Homo sapiens, GI70995211, Length=269, Percent_Identity=32.7137546468402, Blast_Score=115, Evalue=3e-26, Organism=Homo sapiens, GI68989263, Length=188, Percent_Identity=34.5744680851064, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI31542718, Length=249, Percent_Identity=28.1124497991968, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI37594471, Length=229, Percent_Identity=27.9475982532751, Blast_Score=84, Evalue=9e-17, Organism=Homo sapiens, GI37594469, Length=229, Percent_Identity=27.9475982532751, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI4502327, Length=257, Percent_Identity=31.1284046692607, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI260274832, Length=226, Percent_Identity=28.7610619469027, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI45643119, Length=226, Percent_Identity=28.7610619469027, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI260275230, Length=226, Percent_Identity=28.7610619469027, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI150378541, Length=254, Percent_Identity=29.9212598425197, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI20127408, Length=174, Percent_Identity=28.1609195402299, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI157694516, Length=218, Percent_Identity=27.0642201834862, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI213417737, Length=218, Percent_Identity=27.0642201834862, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI157694520, Length=182, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI221142681, Length=261, Percent_Identity=85.4406130268199, Blast_Score=462, Evalue=1e-131, Organism=Escherichia coli, GI1787659, Length=264, Percent_Identity=37.5, Blast_Score=153, Evalue=1e-38, Organism=Escherichia coli, GI87082183, Length=218, Percent_Identity=33.0275229357798, Blast_Score=107, Evalue=7e-25, Organism=Escherichia coli, GI1788682, Length=190, Percent_Identity=35.7894736842105, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1787660, Length=268, Percent_Identity=32.4626865671642, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI1790281, Length=258, Percent_Identity=29.0697674418605, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1788597, Length=248, Percent_Identity=27.8225806451613, Blast_Score=87, Evalue=1e-18, Organism=Caenorhabditis elegans, GI25145438, Length=258, Percent_Identity=34.8837209302326, Blast_Score=143, Evalue=1e-34, Organism=Caenorhabditis elegans, GI17554946, Length=247, Percent_Identity=34.412955465587, Blast_Score=142, Evalue=1e-34, Organism=Caenorhabditis elegans, GI17560910, Length=249, Percent_Identity=28.9156626506024, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17540714, Length=228, Percent_Identity=32.4561403508772, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17534483, Length=257, Percent_Identity=27.6264591439689, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17536985, Length=265, Percent_Identity=25.6603773584906, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17540306, Length=246, Percent_Identity=28.0487804878049, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17558304, Length=220, Percent_Identity=27.2727272727273, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17549921, Length=217, Percent_Identity=26.7281105990783, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI25144276, Length=233, Percent_Identity=28.755364806867, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17508951, Length=233, Percent_Identity=28.755364806867, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17508953, Length=233, Percent_Identity=28.755364806867, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17535521, Length=219, Percent_Identity=26.9406392694064, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI25144160, Length=198, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI25144157, Length=198, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6320241, Length=182, Percent_Identity=27.4725274725275, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI20129971, Length=240, Percent_Identity=34.1666666666667, Blast_Score=135, Evalue=4e-32, Organism=Drosophila melanogaster, GI24653477, Length=240, Percent_Identity=34.1666666666667, Blast_Score=135, Evalue=4e-32, Organism=Drosophila melanogaster, GI24653139, Length=276, Percent_Identity=34.4202898550725, Blast_Score=123, Evalue=1e-28, Organism=Drosophila melanogaster, GI19920382, Length=230, Percent_Identity=30.8695652173913, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI19922422, Length=265, Percent_Identity=26.7924528301887, Blast_Score=100, Evalue=8e-22, Organism=Drosophila melanogaster, GI21357171, Length=223, Percent_Identity=30.9417040358744, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI24654903, Length=185, Percent_Identity=29.7297297297297, Blast_Score=81, Evalue=6e-16, Organism=Drosophila melanogaster, GI24650670, Length=196, Percent_Identity=32.1428571428571, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI28571730, Length=175, Percent_Identity=29.7142857142857, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28571729, Length=175, Percent_Identity=29.7142857142857, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI19921000, Length=187, Percent_Identity=29.9465240641711, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24583077, Length=187, Percent_Identity=29.9465240641711, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24583079, Length=187, Percent_Identity=29.9465240641711, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022852 - InterPro: IPR014748 - InterPro: IPR001753 - InterPro: IPR018376 [H]
Pfam domain/function: PF00378 ECH [H]
EC number: 4.2.1.- [C]
Molecular weight: Translated: 28009; Mature: 27878
Theoretical pI: Translated: 4.46; Mature: 4.46
Prosite motif: PS00166 ENOYL_COA_HYDRATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSESLHVTRNGAILEITLDRPKANAIDAKTSFEMGEVFLAFREDPELRVAIITGAGERFF CCCCEEEECCCEEEEEEECCCCCCCCCCCCCCCHHHEEEEECCCCCEEEEEEECCCCHHH SAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADMII HCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCEEECCCEEEEEEEEEEE CSENASFALPEAKLGIVPDSGGMLRLPKLLPPAIVNELMMTGRGMGAEEALRWGVVNRVV ECCCCCEECCCCEEEEEECCCCEEECCHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH ESDKLMDSARELAQQIAQGAPLAIAAIKEIYRETSELSVEEGYRHIRAGGLKNYPSVLRS HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHCC EDALEGPLAFSEKRDPVWKGR CCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SESLHVTRNGAILEITLDRPKANAIDAKTSFEMGEVFLAFREDPELRVAIITGAGERFF CCCEEEECCCEEEEEEECCCCCCCCCCCCCCCHHHEEEEECCCCCEEEEEEECCCCHHH SAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADMII HCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCEEECCCEEEEEEEEEEE CSENASFALPEAKLGIVPDSGGMLRLPKLLPPAIVNELMMTGRGMGAEEALRWGVVNRVV ECCCCCEECCCCEEEEEECCCCEEECCHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH ESDKLMDSARELAQQIAQGAPLAIAAIKEIYRETSELSVEEGYRHIRAGGLKNYPSVLRS HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHCC EDALEGPLAFSEKRDPVWKGR CCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: D-Carnitine; D-carnitinyl-CoA [C]
Specific reaction: D-Carnitine = L-Carnitine. D-carnitinyl-CoA = L-carnitinyl-CoA [C]
General reaction: Isomerases [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA