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The map label for this gene is yahB [H]

Identifier: 167622148

GI number: 167622148

Start: 248605

End: 249483

Strand: Direct

Name: yahB [H]

Synonym: Shal_0207

Alternate gene names: 167622148

Gene position: 248605-249483 (Clockwise)

Preceding gene: 167622146

Following gene: 167622149

Centisome position: 4.76

GC content: 51.31

Gene sequence:

>879_bases
ATGAATTGGACGCTCGATGAGCTCAGTGCGTTTGTTAACTCAGTAAAACTAGGCTCTTTCTCGGCAGCGGCGAGGAAGAT
GGGTAAGGCGCAATCGCGGATCAGCACCGCAATCAGCAATTTAGAGGCCGGGCTCGGCTTCGAGCTTTTTGATCGTAGTG
CTAAGTTGCCTGTACTTACTCCGCTAGGCGAGGAGATGTTTATCGAGGCGCAGTCAGTGCTTGCTCAGTGTCAGCGTCTT
AATGCACGAGCGATGACGGTAACCTCGGGTGAAGAGGTGGTGTTAACGGTTGCGATGGATGAGGCGGTGCCGGTCAACGC
ATTTGAAGCTCTGTTTCAGCGGATTTCAAGCAAGTTCCCACTACTGAAACTCACCATTATTAATGGCTCCCAGGAAGATA
TTGCTATCTGGGTCGATGAGGGACTAGCCGATATCGGCATCATGTTTCACGCGACTTTATTACTACCTGATTCGCTTGAG
TTTATGTCGATTGGCCAGTTTAAGCAGAGCCTAGTGGTCGCGCCATCACACCCTTTGGCAGCGGTTTCTGCGCCGACGCT
TGAACAGTTGATGCAATATCGCCAGTTAGCAATCTGCGATAGAGCTGGGCACTCGAATACCAAGCCGCTGTCGGCAAACT
ATTGGTATATCGATAGTTATTACTACATCGTCGCCTTGGTTCTGCAGGGCGTTGGCTGGGCATTGGTGCCTGAGCACGTG
GCAAAGTCAGAGTGGTATATCGATGATCTCGCGTCTCTGTCGACCGAATATATCACCGAGCCGTTACTGGTTGAGATGGG
CGTGGTAAATCGCCGTGATAAGCAGATAGGCCCTGTGATGCACTGGCTGTTTGACGAGCTGCATTCGGTGCTTAGTTAG

Upstream 100 bases:

>100_bases
ACAAAATTTGGAGAATAATGAGCGGCAAGTTACTCTGTTATTCAGATTGAATAAAGTTAGCTTCTATCTGTTTTAGATAT
AGGTTGGGCAGGTTAAAGGT

Downstream 100 bases:

>100_bases
GGGAAAGGAAGGGCCTAGGTTCTAGGGTGGTGCTTCGCACCTGCTAGGCAGGCTTGAAGATAGGCTGATCTAAATCTTTT
GCTTTTCCTAGGGCCTATAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MNWTLDELSAFVNSVKLGSFSAAARKMGKAQSRISTAISNLEAGLGFELFDRSAKLPVLTPLGEEMFIEAQSVLAQCQRL
NARAMTVTSGEEVVLTVAMDEAVPVNAFEALFQRISSKFPLLKLTIINGSQEDIAIWVDEGLADIGIMFHATLLLPDSLE
FMSIGQFKQSLVVAPSHPLAAVSAPTLEQLMQYRQLAICDRAGHSNTKPLSANYWYIDSYYYIVALVLQGVGWALVPEHV
AKSEWYIDDLASLSTEYITEPLLVEMGVVNRRDKQIGPVMHWLFDELHSVLS

Sequences:

>Translated_292_residues
MNWTLDELSAFVNSVKLGSFSAAARKMGKAQSRISTAISNLEAGLGFELFDRSAKLPVLTPLGEEMFIEAQSVLAQCQRL
NARAMTVTSGEEVVLTVAMDEAVPVNAFEALFQRISSKFPLLKLTIINGSQEDIAIWVDEGLADIGIMFHATLLLPDSLE
FMSIGQFKQSLVVAPSHPLAAVSAPTLEQLMQYRQLAICDRAGHSNTKPLSANYWYIDSYYYIVALVLQGVGWALVPEHV
AKSEWYIDDLASLSTEYITEPLLVEMGVVNRRDKQIGPVMHWLFDELHSVLS
>Mature_292_residues
MNWTLDELSAFVNSVKLGSFSAAARKMGKAQSRISTAISNLEAGLGFELFDRSAKLPVLTPLGEEMFIEAQSVLAQCQRL
NARAMTVTSGEEVVLTVAMDEAVPVNAFEALFQRISSKFPLLKLTIINGSQEDIAIWVDEGLADIGIMFHATLLLPDSLE
FMSIGQFKQSLVVAPSHPLAAVSAPTLEQLMQYRQLAICDRAGHSNTKPLSANYWYIDSYYYIVALVLQGVGWALVPEHV
AKSEWYIDDLASLSTEYITEPLLVEMGVVNRRDKQIGPVMHWLFDELHSVLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786508, Length=299, Percent_Identity=27.4247491638796, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI87082024, Length=281, Percent_Identity=27.0462633451957, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787530, Length=174, Percent_Identity=31.0344827586207, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1786401, Length=303, Percent_Identity=25.4125412541254, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788296, Length=185, Percent_Identity=29.1891891891892, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789492, Length=292, Percent_Identity=24.6575342465753, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787949, Length=278, Percent_Identity=22.3021582733813, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32284; Mature: 32284

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWTLDELSAFVNSVKLGSFSAAARKMGKAQSRISTAISNLEAGLGFELFDRSAKLPVLT
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCEEC
PLGEEMFIEAQSVLAQCQRLNARAMTVTSGEEVVLTVAMDEAVPVNAFEALFQRISSKFP
CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHCCCC
LLKLTIINGSQEDIAIWVDEGLADIGIMFHATLLLPDSLEFMSIGQFKQSLVVAPSHPLA
EEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCCCCCH
AVSAPTLEQLMQYRQLAICDRAGHSNTKPLSANYWYIDSYYYIVALVLQGVGWALVPEHV
HCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCEECHHHH
AKSEWYIDDLASLSTEYITEPLLVEMGVVNRRDKQIGPVMHWLFDELHSVLS
HCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MNWTLDELSAFVNSVKLGSFSAAARKMGKAQSRISTAISNLEAGLGFELFDRSAKLPVLT
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCEEC
PLGEEMFIEAQSVLAQCQRLNARAMTVTSGEEVVLTVAMDEAVPVNAFEALFQRISSKFP
CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHCCCC
LLKLTIINGSQEDIAIWVDEGLADIGIMFHATLLLPDSLEFMSIGQFKQSLVVAPSHPLA
EEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEECCCCCCH
AVSAPTLEQLMQYRQLAICDRAGHSNTKPLSANYWYIDSYYYIVALVLQGVGWALVPEHV
HCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCEECHHHH
AKSEWYIDDLASLSTEYITEPLLVEMGVVNRRDKQIGPVMHWLFDELHSVLS
HCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]