| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622124
Identifier: 167622124
GI number: 167622124
Start: 215586
End: 215996
Strand: Reverse
Name: 167622124
Synonym: Shal_0183
Alternate gene names: NA
Gene position: 215996-215586 (Counterclockwise)
Preceding gene: 167622125
Following gene: 167622123
Centisome position: 4.13
GC content: 39.17
Gene sequence:
>411_bases ATGAGTAAAAATACGATGATTGCGAATTTCGACGAATTACTAAAAATGACAAAGAATCAATCTAATCCACAACGACTCTT GCTGCTGTTTGCTAATGCCGAGTCCGTTAATCCGAAAAAAAGTAAAAAACATCAAAAAGGCACCATTAGCCCAGTAATGT GTGTCGATAAGTTACCTGAAGAGATCGCTTCCTTTAGCGATCTGGTTGAGGAAGCTGACAACATCAATAAGACTTGGAAC TTCATTTTCATTGCCAGCTTAAGTGGTGAAGAGGGTCAAGCTCCTAGCTCAAACGATGCAGAACAGTTTTTGAATAAGAT GGCCAATGATGTAGAAACGGGCAATGGTGTTGGAAGATACGTAGTATTTGACCGTAAAGAAAGTCCGATTGAGATAGAGT CAAATATCTAG
Upstream 100 bases:
>100_bases AAGAGCCAAATCCTGTTTTGGCAACTCCTATCCGGATTCTGGATCTTAATGCTGCTACTTGTAATAGCAATGTTCAAACA TAACTAAAACAACTACCTAG
Downstream 100 bases:
>100_bases TGTGAGCCAAAAGTTAGGCTTCAGTGAAGTGACCGGGCATCTTATACAGCTAACAGATGCCCTTTGCTTCCTCCCTCTCC CGAGATCCGTTTCCAGCTAA
Product: ribonucleotide reductase subunit alpha
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 136; Mature: 135
Protein sequence:
>136_residues MSKNTMIANFDELLKMTKNQSNPQRLLLLFANAESVNPKKSKKHQKGTISPVMCVDKLPEEIASFSDLVEEADNINKTWN FIFIASLSGEEGQAPSSNDAEQFLNKMANDVETGNGVGRYVVFDRKESPIEIESNI
Sequences:
>Translated_136_residues MSKNTMIANFDELLKMTKNQSNPQRLLLLFANAESVNPKKSKKHQKGTISPVMCVDKLPEEIASFSDLVEEADNINKTWN FIFIASLSGEEGQAPSSNDAEQFLNKMANDVETGNGVGRYVVFDRKESPIEIESNI >Mature_135_residues SKNTMIANFDELLKMTKNQSNPQRLLLLFANAESVNPKKSKKHQKGTISPVMCVDKLPEEIASFSDLVEEADNINKTWNF IFIASLSGEEGQAPSSNDAEQFLNKMANDVETGNGVGRYVVFDRKESPIEIESNI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15168; Mature: 15037
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKNTMIANFDELLKMTKNQSNPQRLLLLFANAESVNPKKSKKHQKGTISPVMCVDKLPE CCCCCEEECHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCCHHHHHHHHHH EIASFSDLVEEADNINKTWNFIFIASLSGEEGQAPSSNDAEQFLNKMANDVETGNGVGRY HHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEE VVFDRKESPIEIESNI EEEECCCCCEEECCCC >Mature Secondary Structure SKNTMIANFDELLKMTKNQSNPQRLLLLFANAESVNPKKSKKHQKGTISPVMCVDKLPE CCCCEEECHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCCHHHHHHHHHH EIASFSDLVEEADNINKTWNFIFIASLSGEEGQAPSSNDAEQFLNKMANDVETGNGVGRY HHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEE VVFDRKESPIEIESNI EEEECCCCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA