| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622099
Identifier: 167622099
GI number: 167622099
Start: 185223
End: 185915
Strand: Direct
Name: 167622099
Synonym: Shal_0158
Alternate gene names: NA
Gene position: 185223-185915 (Clockwise)
Preceding gene: 167622098
Following gene: 167622100
Centisome position: 3.54
GC content: 48.63
Gene sequence:
>693_bases ATGTGGGCTAATCGTCACATACGCCGAGGCGTCAACAAGCGTTCAGACACGATCCATTCAAGCTTTAGTTTGAGTGCGAC CCAATACTGTGCAGTGGCGTTAGTGCTGAGCTTGGTGCTGTCGAGCTGCGCCTTTTTCCTGCCCAATAGTGGACTCGTCT GGCTGGTGCTGGTGGATATATTATTGGTTATCCATGGCCTGTACCTAAAGAACAAGATCACCGCTCTACTCAAGTTAGGG GCGGCGCAGCTAGCGCTGACCCTACCGCTTTATTATCTATTGCATGGTGAAGCTCAACTGCTTGAGGGCGTGATTGTTGT TCTGCGAGTGTTTCTAGCCATGTTGCCAGGCTGGTGGCTATCGAGTACTCAGAGTCCAGAACGACTTGGCGAAGTGCTGA GTTGGGGCTTACCCGCTAAGTGGGCATTTGTTATTGCCGCTTCAATTGGCTTGTTGCCTTATATGTTGCAAGAGACCAAA GAGATATACGCAATACAGTGCTTACGCGGGGCTAACATTACGCCTAAAGCACTAAGGAACCCTAAAAACTGGCCAGAGCT GATCTACTGTGTGGTGCTGCCAGTGCTCATTCAATTATTAAAACTATCAAAACAGATGGCAAAAGCGGCTAAGTTGCGCC ATTTCGGTAAAGTTAGCCAACCAACACATTGGCCTTCAACAAGAGACGATTAA
Upstream 100 bases:
>100_bases CTGACTAGTCACCGCGCGATCCCATCACTTGATGTTGATCGTTACTGGTTGATCGAATCAGGAAAGCTGATGGATGGAGC TGGACATATTGAGCAATTGA
Downstream 100 bases:
>100_bases TGAAATCTCCATTCGATCTACAAGATGCCTTGTTTATAGGGTTCTGCGCCACATTACTGGTGGTGCTAAAAAGTATGTTA CGTCTCAAGCTAGGCTTGAG
Product: cobalt transport protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 230; Mature: 230
Protein sequence:
>230_residues MWANRHIRRGVNKRSDTIHSSFSLSATQYCAVALVLSLVLSSCAFFLPNSGLVWLVLVDILLVIHGLYLKNKITALLKLG AAQLALTLPLYYLLHGEAQLLEGVIVVLRVFLAMLPGWWLSSTQSPERLGEVLSWGLPAKWAFVIAASIGLLPYMLQETK EIYAIQCLRGANITPKALRNPKNWPELIYCVVLPVLIQLLKLSKQMAKAAKLRHFGKVSQPTHWPSTRDD
Sequences:
>Translated_230_residues MWANRHIRRGVNKRSDTIHSSFSLSATQYCAVALVLSLVLSSCAFFLPNSGLVWLVLVDILLVIHGLYLKNKITALLKLG AAQLALTLPLYYLLHGEAQLLEGVIVVLRVFLAMLPGWWLSSTQSPERLGEVLSWGLPAKWAFVIAASIGLLPYMLQETK EIYAIQCLRGANITPKALRNPKNWPELIYCVVLPVLIQLLKLSKQMAKAAKLRHFGKVSQPTHWPSTRDD >Mature_230_residues MWANRHIRRGVNKRSDTIHSSFSLSATQYCAVALVLSLVLSSCAFFLPNSGLVWLVLVDILLVIHGLYLKNKITALLKLG AAQLALTLPLYYLLHGEAQLLEGVIVVLRVFLAMLPGWWLSSTQSPERLGEVLSWGLPAKWAFVIAASIGLLPYMLQETK EIYAIQCLRGANITPKALRNPKNWPELIYCVVLPVLIQLLKLSKQMAKAAKLRHFGKVSQPTHWPSTRDD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25692; Mature: 25692
Theoretical pI: Translated: 10.26; Mature: 10.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWANRHIRRGVNKRSDTIHSSFSLSATQYCAVALVLSLVLSSCAFFLPNSGLVWLVLVDI CCCCHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH LLVIHGLYLKNKITALLKLGAAQLALTLPLYYLLHGEAQLLEGVIVVLRVFLAMLPGWWL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC SSTQSPERLGEVLSWGLPAKWAFVIAASIGLLPYMLQETKEIYAIQCLRGANITPKALRN CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCC PKNWPELIYCVVLPVLIQLLKLSKQMAKAAKLRHFGKVSQPTHWPSTRDD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MWANRHIRRGVNKRSDTIHSSFSLSATQYCAVALVLSLVLSSCAFFLPNSGLVWLVLVDI CCCCHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH LLVIHGLYLKNKITALLKLGAAQLALTLPLYYLLHGEAQLLEGVIVVLRVFLAMLPGWWL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC SSTQSPERLGEVLSWGLPAKWAFVIAASIGLLPYMLQETKEIYAIQCLRGANITPKALRN CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCC PKNWPELIYCVVLPVLIQLLKLSKQMAKAAKLRHFGKVSQPTHWPSTRDD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA