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The map label for this gene is ybaK [H]

Identifier: 167621954

GI number: 167621954

Start: 16512

End: 16979

Strand: Reverse

Name: ybaK [H]

Synonym: Shal_0013

Alternate gene names: 167621954

Gene position: 16979-16512 (Counterclockwise)

Preceding gene: 167621955

Following gene: 167621953

Centisome position: 0.32

GC content: 50.43

Gene sequence:

>468_bases
ATGACCCCCGCTATCGACCTGCTCGTTAAACACAAAATCGCCCACCAAGTTCACGAATATCACCATGATCCAGCTTGCCA
AGCTTATGGCTTAGAAGCTGCCGAAAAGATTGGCGTTGCACCAGAATTAGTCTTTAAAACCTTAGTGGTTAAATTAGACG
CTAAGCAGCTTGCCGTAGCGATTATTCCCGTTGCCGAAAAGCTCAGCATGAAGGCTATCGCCAAGGCGGCGAAAGCCAAA
AAGGCAGTGATGGCAGAAGCCGCTGAGGTGCAACGCAGCTCAGGCTATGTGCTCGGCGGTGTCAGTCCTTTAGGGCAAAA
GCGACTGCTGCTAACCGTTATCGATGCATCCGCCTCTCAGCTAGAGCAGATGTATGTCAGCGGTGGACGCCGAGGACTAG
ATATAGCCTTAGCCCCTGAGGATATCAAGCAATTACTAAAAGCTAACTTCGCCCCTTTGACGGCATAA

Upstream 100 bases:

>100_bases
AACCGATAGAACAAGTGGTTAATCACGGAATTAACGTGCTGGTTATGGAAAAATCACTATAATTGAAAACAGCGTAATCT
CATGTAAACCAGGTAACCAA

Downstream 100 bases:

>100_bases
AGCTGCACCACCCTTTGTAATGTTCCACGTGGAACACTGTAAAGAGTAAATGATCTTAGGCTCACAAATTATGGCTAGCG
GCTTGGATAAACTATGACGC

Product: ybaK/ebsC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MTPAIDLLVKHKIAHQVHEYHHDPACQAYGLEAAEKIGVAPELVFKTLVVKLDAKQLAVAIIPVAEKLSMKAIAKAAKAK
KAVMAEAAEVQRSSGYVLGGVSPLGQKRLLLTVIDASASQLEQMYVSGGRRGLDIALAPEDIKQLLKANFAPLTA

Sequences:

>Translated_155_residues
MTPAIDLLVKHKIAHQVHEYHHDPACQAYGLEAAEKIGVAPELVFKTLVVKLDAKQLAVAIIPVAEKLSMKAIAKAAKAK
KAVMAEAAEVQRSSGYVLGGVSPLGQKRLLLTVIDASASQLEQMYVSGGRRGLDIALAPEDIKQLLKANFAPLTA
>Mature_154_residues
TPAIDLLVKHKIAHQVHEYHHDPACQAYGLEAAEKIGVAPELVFKTLVVKLDAKQLAVAIIPVAEKLSMKAIAKAAKAKK
AVMAEAAEVQRSSGYVLGGVSPLGQKRLLLTVIDASASQLEQMYVSGGRRGLDIALAPEDIKQLLKANFAPLTA

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro). May compensate for the lack of Cys-tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak activity against Cys-tRNA(Cys) and Gly- tRNA(Gly), as wel

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=155, Percent_Identity=52.258064516129, Blast_Score=160, Evalue=4e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 16501; Mature: 16369

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPAIDLLVKHKIAHQVHEYHHDPACQAYGLEAAEKIGVAPELVFKTLVVKLDAKQLAVA
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHCCCHHHHHHHHHHHCCHHHHHHH
IIPVAEKLSMKAIAKAAKAKKAVMAEAAEVQRSSGYVLGGVSPLGQKRLLLTVIDASASQ
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCEEEEEEECCCHHH
LEQMYVSGGRRGLDIALAPEDIKQLLKANFAPLTA
HHHHHHCCCCCCCEEEECHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TPAIDLLVKHKIAHQVHEYHHDPACQAYGLEAAEKIGVAPELVFKTLVVKLDAKQLAVA
CHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHCCCHHHHHHHHHHHCCHHHHHHH
IIPVAEKLSMKAIAKAAKAKKAVMAEAAEVQRSSGYVLGGVSPLGQKRLLLTVIDASASQ
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCEEEEEEECCCHHH
LEQMYVSGGRRGLDIALAPEDIKQLLKANFAPLTA
HHHHHHCCCCCCCEEEECHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 3012467; 10493123 [H]