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The map label for this gene is cspC [H]

Identifier: 167040687

GI number: 167040687

Start: 2076985

End: 2077188

Strand: Reverse

Name: cspC [H]

Synonym: Teth514_2064

Alternate gene names: 167040687

Gene position: 2077188-2076985 (Counterclockwise)

Preceding gene: 167040688

Following gene: 167040686

Centisome position: 84.53

GC content: 39.71

Gene sequence:

>204_bases
ATGGTAAGAGGTAAAGTAAAATGGTTTAATGCCGAGAAAGGCTATGGCTTTATTGAAAGGGAGGATGGCACAGACGTATT
TGTCCATTACTCAGCAATTGAAGGCGATGGCTTTAAGACATTAGAGGAAGGACAAAAAGTTGAATTCGAGGTAGTTGAAG
CTACAAAAGGACCACAAGCTTCTAAGGTAAGAAAGGTAAACTGA

Upstream 100 bases:

>100_bases
ATGGGATATAATAAAATTTCAATAAAAAAATTTGACAATTTGATATATAAGTGCTATGATAGAGAAGTAAATTATTTATC
AAGTTTGGAGGAAGATATAA

Downstream 100 bases:

>100_bases
CGCGAAATCAAACCCTAACATTAAATATGTTAGGGTTTTTTGATATAGGAGGTATTTACGATGAGGGATTATATTGTGCG
AGCTACAGCTTATAATAATA

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
MVRGKVKWFNAEKGYGFIEREDGTDVFVHYSAIEGDGFKTLEEGQKVEFEVVEATKGPQASKVRKVN

Sequences:

>Translated_67_residues
MVRGKVKWFNAEKGYGFIEREDGTDVFVHYSAIEGDGFKTLEEGQKVEFEVVEATKGPQASKVRKVN
>Mature_67_residues
MVRGKVKWFNAEKGYGFIEREDGTDVFVHYSAIEGDGFKTLEEGQKVEFEVVEATKGPQASKVRKVN

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=63, Percent_Identity=61.9047619047619, Blast_Score=86, Evalue=4e-19,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=59.0909090909091, Blast_Score=84, Evalue=1e-18,
Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=56.0606060606061, Blast_Score=81, Evalue=1e-17,
Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=57.1428571428571, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI2367114, Length=63, Percent_Identity=53.968253968254, Blast_Score=76, Evalue=3e-16,
Organism=Escherichia coli, GI1787834, Length=63, Percent_Identity=57.1428571428571, Blast_Score=74, Evalue=3e-15,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=50.7462686567164, Blast_Score=69, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=47.5409836065574, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7568; Mature: 7568

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRGKVKWFNAEKGYGFIEREDGTDVFVHYSAIEGDGFKTLEEGQKVEFEVVEATKGPQA
CCCCCEEEEECCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCC
SKVRKVN
CCEEECC
>Mature Secondary Structure
MVRGKVKWFNAEKGYGFIEREDGTDVFVHYSAIEGDGFKTLEEGQKVEFEVVEATKGPQA
CCCCCEEEEECCCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCC
SKVRKVN
CCEEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]