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The map label for this gene is yvrC [H]

Identifier: 167040563

GI number: 167040563

Start: 1944375

End: 1945322

Strand: Reverse

Name: yvrC [H]

Synonym: Teth514_1934

Alternate gene names: 167040563

Gene position: 1945322-1944375 (Counterclockwise)

Preceding gene: 167040564

Following gene: 167040562

Centisome position: 79.17

GC content: 36.6

Gene sequence:

>948_bases
ATGAGAAGATTTAAAGGTTTACTTGCTTTATTGGTAGTCTTTGCTTTAATGTTTTCACTGGCGGCTTGTTCAACAAACAA
TGCTACAAAGCCACAAGATACATCTCAAACAGCAACTGAAATTGTAAAAACACAGTTTCCTTTAAAAGTTACAGACTTTT
TAGGAAGAGAAGTAACTATAGAGAAAGAACCCCAAAGGATAGTTTCTCTTGCGCCTTCTACAACAGAGCTTATATATGCT
TTAGGAGCAGGAAATAAAGTAGTGGGTGTTACAGACTTTGACAATTATCCACCTGAGGTCAAGGATGTACCCAAAGTGGG
GGGGTTTAAAGGGCCAAATGTAGAAGCGATTACTGCTCAAAAGCCTGATATAATATTTGCTTCCACTCTTTCCGGTAAAG
AGCAAATGGAATCTTTAGAAAAAATGGGTATACCCGTCGTGATGCTAGAGGCTAAAGACATTGACCAGATATACCAATCT
ATAAAAATAATAGGCCAAATAACAGGTACTGAGAAAAAAGGTGAAGAAATAATCAAAGAAATGCAGGACAAAATAAAAGA
AATAAACGACAAAGTCAAAAACCTTCCGAAAGTCAGCGTATTTTATCTTGTCTCTCTTGACGGAAACTGGACATCTGGAA
AAGGGACTTTTATTGATGAGCTCATAAACCTTGCAGGTGGCAAAAACGTTGCAGAGGATGTAAATGGTTGGGCGCAGTAC
AGCGTAGAAGAATTAGTCAAGAAAAATCCAGATGTGATAATAACTTCTCCTCATGCAGGGGATGTGAAAGACATTAAAAA
CATGGCAGGATATAAAGATACTAATGCTGTTAAAAATGACAAAGTATTTGTGATAAGCAATGACGACATAATATCAAGAG
CTTCTAATAGAATTGTTTTAGGACTTGAAGAAATCGCAAAATTCTTACATCCGGAGGCATTTAAGTAA

Upstream 100 bases:

>100_bases
GTGGAATGGAATTTTTATGCTTAATTTTGGCAAAAAAGGTCTACCTCCGTGGGGTAGGTCTTTTTTTGATACTTGAAAAA
TTTAAATTAGGAGGGTACTT

Downstream 100 bases:

>100_bases
AGTGGGAGTAAAAAAAGGGATATATTTTGGTACAGCCTTTTCACTGCTTGTCTTTACCATGATTTTATCAATTTCTGCAG
GGGCGGTAAAAATACCCCTG

Product: periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MRRFKGLLALLVVFALMFSLAACSTNNATKPQDTSQTATEIVKTQFPLKVTDFLGREVTIEKEPQRIVSLAPSTTELIYA
LGAGNKVVGVTDFDNYPPEVKDVPKVGGFKGPNVEAITAQKPDIIFASTLSGKEQMESLEKMGIPVVMLEAKDIDQIYQS
IKIIGQITGTEKKGEEIIKEMQDKIKEINDKVKNLPKVSVFYLVSLDGNWTSGKGTFIDELINLAGGKNVAEDVNGWAQY
SVEELVKKNPDVIITSPHAGDVKDIKNMAGYKDTNAVKNDKVFVISNDDIISRASNRIVLGLEEIAKFLHPEAFK

Sequences:

>Translated_315_residues
MRRFKGLLALLVVFALMFSLAACSTNNATKPQDTSQTATEIVKTQFPLKVTDFLGREVTIEKEPQRIVSLAPSTTELIYA
LGAGNKVVGVTDFDNYPPEVKDVPKVGGFKGPNVEAITAQKPDIIFASTLSGKEQMESLEKMGIPVVMLEAKDIDQIYQS
IKIIGQITGTEKKGEEIIKEMQDKIKEINDKVKNLPKVSVFYLVSLDGNWTSGKGTFIDELINLAGGKNVAEDVNGWAQY
SVEELVKKNPDVIITSPHAGDVKDIKNMAGYKDTNAVKNDKVFVISNDDIISRASNRIVLGLEEIAKFLHPEAFK
>Mature_315_residues
MRRFKGLLALLVVFALMFSLAACSTNNATKPQDTSQTATEIVKTQFPLKVTDFLGREVTIEKEPQRIVSLAPSTTELIYA
LGAGNKVVGVTDFDNYPPEVKDVPKVGGFKGPNVEAITAQKPDIIFASTLSGKEQMESLEKMGIPVVMLEAKDIDQIYQS
IKIIGQITGTEKKGEEIIKEMQDKIKEINDKVKNLPKVSVFYLVSLDGNWTSGKGTFIDELINLAGGKNVAEDVNGWAQY
SVEELVKKNPDVIITSPHAGDVKDIKNMAGYKDTNAVKNDKVFVISNDDIISRASNRIVLGLEEIAKFLHPEAFK

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786353, Length=248, Percent_Identity=28.2258064516129, Blast_Score=118, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 34592; Mature: 34592

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRFKGLLALLVVFALMFSLAACSTNNATKPQDTSQTATEIVKTQFPLKVTDFLGREVTI
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEHHHHCCCEEEE
EKEPQRIVSLAPSTTELIYALGAGNKVVGVTDFDNYPPEVKDVPKVGGFKGPNVEAITAQ
CCCCHHHHHCCCCHHHEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECC
KPDIIFASTLSGKEQMESLEKMGIPVVMLEAKDIDQIYQSIKIIGQITGTEKKGEEIIKE
CCCEEEEECCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
MQDKIKEINDKVKNLPKVSVFYLVSLDGNWTSGKGTFIDELINLAGGKNVAEDVNGWAQY
HHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHH
SVEELVKKNPDVIITSPHAGDVKDIKNMAGYKDTNAVKNDKVFVISNDDIISRASNRIVL
HHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHCCCEEEE
GLEEIAKFLHPEAFK
EHHHHHHHHCCCCCC
>Mature Secondary Structure
MRRFKGLLALLVVFALMFSLAACSTNNATKPQDTSQTATEIVKTQFPLKVTDFLGREVTI
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEHHHHCCCEEEE
EKEPQRIVSLAPSTTELIYALGAGNKVVGVTDFDNYPPEVKDVPKVGGFKGPNVEAITAQ
CCCCHHHHHCCCCHHHEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECC
KPDIIFASTLSGKEQMESLEKMGIPVVMLEAKDIDQIYQSIKIIGQITGTEKKGEEIIKE
CCCEEEEECCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
MQDKIKEINDKVKNLPKVSVFYLVSLDGNWTSGKGTFIDELINLAGGKNVAEDVNGWAQY
HHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHH
SVEELVKKNPDVIITSPHAGDVKDIKNMAGYKDTNAVKNDKVFVISNDDIISRASNRIVL
HHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHCCCEEEE
GLEEIAKFLHPEAFK
EHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]