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The map label for this gene is yqgF [C]

Identifier: 167040129

GI number: 167040129

Start: 1524572

End: 1524991

Strand: Direct

Name: yqgF [C]

Synonym: Teth514_1491

Alternate gene names: 167040129

Gene position: 1524572-1524991 (Clockwise)

Preceding gene: 167040128

Following gene: 167040130

Centisome position: 62.04

GC content: 32.86

Gene sequence:

>420_bases
TTGAGGATTATGGGTTTAGATGTGGGGGATAAAACAATCGGGATAGCCATAAGTGACTTGTCAGGTACAATTGCACAGGG
ACTTACTACTATTAAAAGAAGTAGTAACAAAAAAGATTTTGAGAGAATAAAACAAATAATAAATGAATATGAAGTGGGAA
TGATAATTGTAGGATTACCTAAGAATTTGAATGGTACTTTGGGGCCACAAGGACAAAAAGTTGTGAGATTTGTTGAACAC
TTAAAGGAAGCTATTAATATACCAATAATATTGTGGGATGAAAGGCTTACTACAGTAGAAGCGGAAAGGGTTTTAATAGA
AAAAGCTGATATAAGTAGGGCAAAGAGAAAAGAAGTAATTGATAAGCTGGCTGCAGTTCTTATACTTCAGAACTACTTAG
ATTCACAAAAAAATAAATAA

Upstream 100 bases:

>100_bases
TTAGTAGAAGAACTTTTGAGAGAGTATTTATCTTCCCAAAAGTAAGAAAAACAAAATTGCCTCACCTTAGGTGAGGCGAT
TTTAGAATGGAGAGATTTTT

Downstream 100 bases:

>100_bases
ATTTTTATTAAAAACTTGACAGTCTTTTTGGTATGTTATACAATTACATTATCTTGAAGTAGAATTGAGGTGAAATAGTA
TGGAACCAGAAATTATTCAG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MRIMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKNLNGTLGPQGQKVVRFVEH
LKEAINIPIILWDERLTTVEAERVLIEKADISRAKRKEVIDKLAAVLILQNYLDSQKNK

Sequences:

>Translated_139_residues
MRIMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKNLNGTLGPQGQKVVRFVEH
LKEAINIPIILWDERLTTVEAERVLIEKADISRAKRKEVIDKLAAVLILQNYLDSQKNK
>Mature_139_residues
MRIMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKNLNGTLGPQGQKVVRFVEH
LKEAINIPIILWDERLTTVEAERVLIEKADISRAKRKEVIDKLAAVLILQNYLDSQKNK

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=132, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 15566; Mature: 15566

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLP
CEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEECC
KNLNGTLGPQGQKVVRFVEHLKEAINIPIILWDERLTTVEAERVLIEKADISRAKRKEVI
CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
DKLAAVLILQNYLDSQKNK
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRIMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLP
CEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEECC
KNLNGTLGPQGQKVVRFVEHLKEAINIPIILWDERLTTVEAERVLIEKADISRAKRKEVI
CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
DKLAAVLILQNYLDSQKNK
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA