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The map label for this gene is cbiD

Identifier: 167038976

GI number: 167038976

Start: 325923

End: 327023

Strand: Direct

Name: cbiD

Synonym: Teth514_0309

Alternate gene names: 167038976

Gene position: 325923-327023 (Clockwise)

Preceding gene: 167038975

Following gene: 167038977

Centisome position: 13.26

GC content: 40.42

Gene sequence:

>1101_bases
ATGGAAGTATATACAATTAAAGAAGGTAAAAAGCTGAGATACGGCTATACTACTGGCTCGTGTGCGGCTGCTGCCTCAAA
AGCCGCTACCTACATGCTTTTTACAGGGGAGAAAATAGACACTGTAGAGATAGATACACCAAAGGGGTGGCACCTTATAC
TTGATGTTTTAGATGTGACGTCAGGAGAAGGGTGGGTAAAATGTGGAATAAGAAAAGACGGCGGTGATGACCCTGATGCA
ACTCACGGGCTTATAATATATTCAAAAGTGGAATTAAAAGAGGGAGAAGGAATTGACGTTTACGGAGGAGAGGGAGTAGG
AGTTGTCACAAAACCGGGGCTACCCGTAAACCCTGGAAAACCCGCTATTAATCCTGTTCCAATGTCCATGATTTTAAATG
AAGTCAAAAAAGTACTGCCAGAAGGGAAAGGTGTAAAAATTACCATAAGCGTGCCAGGTGGTGAAAAGGTGGCTTTAAAA
ACTTTTAATCCGCGGCTTGGAATAGTTGGAGGAATATCAATACTTGGTACCTCAGGAATTGTAGAGCCTATGTCGGAGGA
AGCTTTAAAATCTTCTCTTGAGTTAGAACTTTCTATTCTTTCTGCCGAGGGACATAAAAAGGTAGTTTTTGCTCCAGGAA
ATTACGGCAAAGATTATGCTATGAAAGAAGGCCTTGAAGAAAGGCTTATCATATCTTATGGGAATTTCTTAGGATTTATG
CTGGAAAAAGCAGTAGAGTACGGCTTTACACATGTGGTGTTGGCAGGGCATATAGGTAAACTCGTAAAAGTAGCAGCAGG
GATATTTAATACCCACAGCCATGTTGCAGATGCAAGAGCAGAAATAATGGCGGCTTATGTAGCCCATTTTGGTGCAGATA
AAAAGACTGTTGACAAAGTTCTGGATTCAAATACAACTGAAGAAGCCCTCGATATAATAGAAAAGGCGGGAGTCAATATA
AAAGACTTTAGTCAGTTTATCGCTGACAGGGTCTACATGAAATGTAAGCAGTATGTTTATGATAAATTAAATATCGAAGT
TCACCTCATTTCATTGAAAAGAGGCATTATTGCAAAAGCAGGAGAGAAAGTAGAATGGTGA

Upstream 100 bases:

>100_bases
GAAGAAAAGGTGGAAGTACAATAGCGGCAGCTATAGTCAATGCTCTTTTGTACATGATGGGCGATTGATACAAAAGACAG
GTGCAAAAGTGGGTGAAATT

Downstream 100 bases:

>100_bases
CGATTGTGGGAATAGGGCCGGGAAACAAGAAATTCATTACCCCCTATGCACTTGAAAAAATAAAAAAAGCGGATGTGCTA
GTGGGAGGCAGGCGCCATCT

Product: cobalt-precorrin-6A synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MEVYTIKEGKKLRYGYTTGSCAAAASKAATYMLFTGEKIDTVEIDTPKGWHLILDVLDVTSGEGWVKCGIRKDGGDDPDA
THGLIIYSKVELKEGEGIDVYGGEGVGVVTKPGLPVNPGKPAINPVPMSMILNEVKKVLPEGKGVKITISVPGGEKVALK
TFNPRLGIVGGISILGTSGIVEPMSEEALKSSLELELSILSAEGHKKVVFAPGNYGKDYAMKEGLEERLIISYGNFLGFM
LEKAVEYGFTHVVLAGHIGKLVKVAAGIFNTHSHVADARAEIMAAYVAHFGADKKTVDKVLDSNTTEEALDIIEKAGVNI
KDFSQFIADRVYMKCKQYVYDKLNIEVHLISLKRGIIAKAGEKVEW

Sequences:

>Translated_366_residues
MEVYTIKEGKKLRYGYTTGSCAAAASKAATYMLFTGEKIDTVEIDTPKGWHLILDVLDVTSGEGWVKCGIRKDGGDDPDA
THGLIIYSKVELKEGEGIDVYGGEGVGVVTKPGLPVNPGKPAINPVPMSMILNEVKKVLPEGKGVKITISVPGGEKVALK
TFNPRLGIVGGISILGTSGIVEPMSEEALKSSLELELSILSAEGHKKVVFAPGNYGKDYAMKEGLEERLIISYGNFLGFM
LEKAVEYGFTHVVLAGHIGKLVKVAAGIFNTHSHVADARAEIMAAYVAHFGADKKTVDKVLDSNTTEEALDIIEKAGVNI
KDFSQFIADRVYMKCKQYVYDKLNIEVHLISLKRGIIAKAGEKVEW
>Mature_366_residues
MEVYTIKEGKKLRYGYTTGSCAAAASKAATYMLFTGEKIDTVEIDTPKGWHLILDVLDVTSGEGWVKCGIRKDGGDDPDA
THGLIIYSKVELKEGEGIDVYGGEGVGVVTKPGLPVNPGKPAINPVPMSMILNEVKKVLPEGKGVKITISVPGGEKVALK
TFNPRLGIVGGISILGTSGIVEPMSEEALKSSLELELSILSAEGHKKVVFAPGNYGKDYAMKEGLEERLIISYGNFLGFM
LEKAVEYGFTHVVLAGHIGKLVKVAAGIFNTHSHVADARAEIMAAYVAHFGADKKTVDKVLDSNTTEEALDIIEKAGVNI
KDFSQFIADRVYMKCKQYVYDKLNIEVHLISLKRGIIAKAGEKVEW

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CBID_THEPX (B0K2K5)

Other databases:

- EMBL:   CP000923
- RefSeq:   YP_001661961.1
- ProteinModelPortal:   B0K2K5
- SMR:   B0K2K5
- GeneID:   5876442
- GenomeReviews:   CP000923_GR
- KEGG:   tex:Teth514_0309
- HOGENOM:   HBG705387
- OMA:   RRGWTTG
- ProtClustDB:   PRK00075
- BioCyc:   TSP1755:TETH514_0309-MONOMER
- HAMAP:   MF_00787
- InterPro:   IPR002748
- PIRSF:   PIRSF026782
- TIGRFAMs:   TIGR00312

Pfam domain/function: PF01888 CbiD; SSF111342 Cbl_biosynth_CbiD

EC number: NA

Molecular weight: Translated: 39489; Mature: 39489

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVYTIKEGKKLRYGYTTGSCAAAASKAATYMLFTGEKIDTVEIDTPKGWHLILDVLDVT
CEEEEECCCCEEEEECCCCHHHHHHHCCEEEEEEECCCEEEEEECCCCCCEEEEEEECCC
SGEGWVKCGIRKDGGDDPDATHGLIIYSKVELKEGEGIDVYGGEGVGVVTKPGLPVNPGK
CCCCEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEECCCCEEEEECCCCCCCCCC
PAINPVPMSMILNEVKKVLPEGKGVKITISVPGGEKVALKTFNPRLGIVGGISILGTSGI
CCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCEEECCCCC
VEPMSEEALKSSLELELSILSAEGHKKVVFAPGNYGKDYAMKEGLEERLIISYGNFLGFM
CCCHHHHHHHHCCEEEEEEEECCCCEEEEECCCCCCCCHHHHCCCHHEEEEEHHHHHHHH
LEKAVEYGFTHVVLAGHIGKLVKVAAGIFNTHSHVADARAEIMAAYVAHFGADKKTVDKV
HHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LDSNTTEEALDIIEKAGVNIKDFSQFIADRVYMKCKQYVYDKLNIEVHLISLKRGIIAKA
HCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCHHHCC
GEKVEW
CCCCCC
>Mature Secondary Structure
MEVYTIKEGKKLRYGYTTGSCAAAASKAATYMLFTGEKIDTVEIDTPKGWHLILDVLDVT
CEEEEECCCCEEEEECCCCHHHHHHHCCEEEEEEECCCEEEEEECCCCCCEEEEEEECCC
SGEGWVKCGIRKDGGDDPDATHGLIIYSKVELKEGEGIDVYGGEGVGVVTKPGLPVNPGK
CCCCEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEECCCCEEEEECCCCCCCCCC
PAINPVPMSMILNEVKKVLPEGKGVKITISVPGGEKVALKTFNPRLGIVGGISILGTSGI
CCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCEEECCCCC
VEPMSEEALKSSLELELSILSAEGHKKVVFAPGNYGKDYAMKEGLEERLIISYGNFLGFM
CCCHHHHHHHHCCEEEEEEEECCCCEEEEECCCCCCCCHHHHCCCHHEEEEEHHHHHHHH
LEKAVEYGFTHVVLAGHIGKLVKVAAGIFNTHSHVADARAEIMAAYVAHFGADKKTVDKV
HHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LDSNTTEEALDIIEKAGVNIKDFSQFIADRVYMKCKQYVYDKLNIEVHLISLKRGIIAKA
HCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCHHHCC
GEKVEW
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA