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The map label for this gene is ypsC [H]

Identifier: 167038960

GI number: 167038960

Start: 312333

End: 313466

Strand: Direct

Name: ypsC [H]

Synonym: Teth514_0293

Alternate gene names: 167038960

Gene position: 312333-313466 (Clockwise)

Preceding gene: 167038958

Following gene: 167038961

Centisome position: 12.71

GC content: 34.92

Gene sequence:

>1134_bases
ATGTCAAAAATAGAATTTATAGCATCTACTCTTTTTGGTGTTGAAGCAATAACTGCAAGAGAGGTAAAAGAGTTAGGGTA
TAAAGATGTCACTGTAGAGAATGGAAAAGTCACTTTTGTAGGCGATGAGATGGCTTTATGCCGTTCTAATCTTTGGATTA
GAACGGCAGAGAGAATATACGTAAAAATAGGGGAATTTACTGCCACAACTTTTGAAGAACTTTTTGAAGGTACAAAGGCT
CTTCACTGGGAAGATTGGATACCTGAAGATGGCAGGTTTCCTGTGGAGGGTTATTCAATAAAATCCAAGCTTTTCAGCGT
GTCTGACTGTCAGGCAATAGTTAAAAAAGCTGTTGTGGAAAGGCTTAAGAAGAAATACAAAAAAGAATGGTTTGAAGAAA
ACGGCGCAACTTATAAAATAAAATTTTCATTAATGAAAGACAAGGTAACACTTATGATTGACACGAGTGGTGACGGTTTA
CACAAAAGAGGCTATAGAGTCATATCCAATGAAGCACCTTTGAGAGAAACTTTGGCTGCCGCTATGATAATGCTTAGCTT
TTGGAAACCAGATAGACCTTTGATAGATCCTTTTTGTGGCTCTGGAACGATTCCAATTGAAGCAGCTATGATTGGAATAA
ATCTCGCACCAGGTTTAAAACGACAATTTGTTTCCGAAAAATGGTGGAGAATATCAAATAAATTATGGAAAGAAGCGAGA
GAAGAAGCAGTTGGTGCTATTAAAAAAGATATAACTTTAAACATAAAAGGATATGACATTGACGAAAACGCCATCAAATT
GTCAAAAGACAATGCGCGTAAAGCTGGTGTAGAGAAATACATAACTTTTGAAAATATCCCATTAAAAGATTTAAAAACAG
ATGATAAATATGGTGTTATAATATGCAATCCTCCTTATGGTGAAAGGATGGGGGAATTGGAAGAAGTAGAAAAACTTTAT
AAAGAAATGGGAAAAGTTTTCAAAAAACTTGATACGTGGTCTTTTTATATACTGACTTCCCATGAAAGATTTGAGAAACT
CTTTGGAAGAGAGGCTTCTAAAAAAAGAAAGCTTTACAATGGCATGTTAAAAGCTTACTATTATCAGTATTATGGACCAA
AACCAGAAAACTAA

Upstream 100 bases:

>100_bases
ATAAAAACAAGATAAAAGGGAAAAAATGATATATATTTATAGATGCAAGTGATATAATAAGGTTGAATTAGTTAAACTTA
GAGGCAAAAGGAGATAAAAT

Downstream 100 bases:

>100_bases
TTTTTATTGAGTTTTTTCTATGTGAGGGTTATAATAAAATATAAGATTATCGATAAAAATTGGTGGTGGAGTTATGGATA
ATGCAGTGAGGAAGAAAGCA

Product: putative RNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MSKIEFIASTLFGVEAITAREVKELGYKDVTVENGKVTFVGDEMALCRSNLWIRTAERIYVKIGEFTATTFEELFEGTKA
LHWEDWIPEDGRFPVEGYSIKSKLFSVSDCQAIVKKAVVERLKKKYKKEWFEENGATYKIKFSLMKDKVTLMIDTSGDGL
HKRGYRVISNEAPLRETLAAAMIMLSFWKPDRPLIDPFCGSGTIPIEAAMIGINLAPGLKRQFVSEKWWRISNKLWKEAR
EEAVGAIKKDITLNIKGYDIDENAIKLSKDNARKAGVEKYITFENIPLKDLKTDDKYGVIICNPPYGERMGELEEVEKLY
KEMGKVFKKLDTWSFYILTSHERFEKLFGREASKKRKLYNGMLKAYYYQYYGPKPEN

Sequences:

>Translated_377_residues
MSKIEFIASTLFGVEAITAREVKELGYKDVTVENGKVTFVGDEMALCRSNLWIRTAERIYVKIGEFTATTFEELFEGTKA
LHWEDWIPEDGRFPVEGYSIKSKLFSVSDCQAIVKKAVVERLKKKYKKEWFEENGATYKIKFSLMKDKVTLMIDTSGDGL
HKRGYRVISNEAPLRETLAAAMIMLSFWKPDRPLIDPFCGSGTIPIEAAMIGINLAPGLKRQFVSEKWWRISNKLWKEAR
EEAVGAIKKDITLNIKGYDIDENAIKLSKDNARKAGVEKYITFENIPLKDLKTDDKYGVIICNPPYGERMGELEEVEKLY
KEMGKVFKKLDTWSFYILTSHERFEKLFGREASKKRKLYNGMLKAYYYQYYGPKPEN
>Mature_376_residues
SKIEFIASTLFGVEAITAREVKELGYKDVTVENGKVTFVGDEMALCRSNLWIRTAERIYVKIGEFTATTFEELFEGTKAL
HWEDWIPEDGRFPVEGYSIKSKLFSVSDCQAIVKKAVVERLKKKYKKEWFEENGATYKIKFSLMKDKVTLMIDTSGDGLH
KRGYRVISNEAPLRETLAAAMIMLSFWKPDRPLIDPFCGSGTIPIEAAMIGINLAPGLKRQFVSEKWWRISNKLWKEARE
EAVGAIKKDITLNIKGYDIDENAIKLSKDNARKAGVEKYITFENIPLKDLKTDDKYGVIICNPPYGERMGELEEVEKLYK
EMGKVFKKLDTWSFYILTSHERFEKLFGREASKKRKLYNGMLKAYYYQYYGPKPEN

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=376, Percent_Identity=31.1170212765957, Blast_Score=187, Evalue=1e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43527; Mature: 43396

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIEFIASTLFGVEAITAREVKELGYKDVTVENGKVTFVGDEMALCRSNLWIRTAERIY
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEECHHHHHHCCCEEEEEEEEE
VKIGEFTATTFEELFEGTKALHWEDWIPEDGRFPVEGYSIKSKLFSVSDCQAIVKKAVVE
EEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHH
RLKKKYKKEWFEENGATYKIKFSLMKDKVTLMIDTSGDGLHKRGYRVISNEAPLRETLAA
HHHHHHHHHHHHCCCCEEEEEEEEEECEEEEEEECCCCCCHHCCCEEECCCCCHHHHHHH
AMIMLSFWKPDRPLIDPFCGSGTIPIEAAMIGINLAPGLKRQFVSEKWWRISNKLWKEAR
HHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
EEAVGAIKKDITLNIKGYDIDENAIKLSKDNARKAGVEKYITFENIPLKDLKTDDKYGVI
HHHHHHHHCCEEEEEECEECCCCCEEECCCCHHHCCHHHEEEECCCCHHCCCCCCCEEEE
ICNPPYGERMGELEEVEKLYKEMGKVFKKLDTWSFYILTSHERFEKLFGREASKKRKLYN
EECCCCCCHHCCHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHCCCHHHHHHHHH
GMLKAYYYQYYGPKPEN
HHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SKIEFIASTLFGVEAITAREVKELGYKDVTVENGKVTFVGDEMALCRSNLWIRTAERIY
CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEECHHHHHHCCCEEEEEEEEE
VKIGEFTATTFEELFEGTKALHWEDWIPEDGRFPVEGYSIKSKLFSVSDCQAIVKKAVVE
EEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHH
RLKKKYKKEWFEENGATYKIKFSLMKDKVTLMIDTSGDGLHKRGYRVISNEAPLRETLAA
HHHHHHHHHHHHCCCCEEEEEEEEEECEEEEEEECCCCCCHHCCCEEECCCCCHHHHHHH
AMIMLSFWKPDRPLIDPFCGSGTIPIEAAMIGINLAPGLKRQFVSEKWWRISNKLWKEAR
HHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
EEAVGAIKKDITLNIKGYDIDENAIKLSKDNARKAGVEKYITFENIPLKDLKTDDKYGVI
HHHHHHHHCCEEEEEECEECCCCCEEECCCCHHHCCHHHEEEECCCCHHCCCCCCCEEEE
ICNPPYGERMGELEEVEKLYKEMGKVFKKLDTWSFYILTSHERFEKLFGREASKKRKLYN
EECCCCCCHHCCHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHCCCHHHHHHHHH
GMLKAYYYQYYGPKPEN
HHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]