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The map label for this gene is xylF [H]

Identifier: 167038894

GI number: 167038894

Start: 235044

End: 236126

Strand: Direct

Name: xylF [H]

Synonym: Teth514_0225

Alternate gene names: 167038894

Gene position: 235044-236126 (Clockwise)

Preceding gene: 167038893

Following gene: 167038895

Centisome position: 9.57

GC content: 35.83

Gene sequence:

>1083_bases
GTGGAGAGTAAAAATGTAATCAAAGTGATAGTAGCAATTGTCCTTATGATTATTTTGGGTGTTTTAGTTTTTTTGACTGT
TAAGCATGTAGTAGCGTATAGAGAGGTAAAGAATGTAAACTCTAATCCCTTAGATAAAAAAGGGCATAAGATTAAAATTG
GTTTTTCTCTTGGTACCTTAAAAGAAGAAAGATGGATTAAAGATAGAGATATAGTAATGGCAAAGTTACGGGAATTGGGG
GCAGAGGTTTTAGTGCAAAACGCTAATAATGATGACCAAGACCAATTAAAACAGGTGAGATACCTTTTGGACCAAAAAAT
TGACGTACTTATCATTGTTCCAAATGACCTTGAAAAAGCCTCTTATGCGGTATCTTTGGCACAAAAAGAAGGAGTAAAAG
TGATATCCTATGACAGGCTTGTTACAAAATCAAATGTAGACCTTTATATATCCTTTGACAATGTGAAAGTTGGGAAACTG
ATGGCGGAATATTTAGTGAAAAGAGTGCCAAGAGGAAATTATCTCATAATAAACGGTGCTACGACGGATAACAACACAAA
GATGATAAAGGAAGGATATGACAGTGTTTTAAAACCTAAAATTGAAAGTGGAGACATAAAAATTGTAAAAGAAGATTGGG
CGCCTAATTGGATGACGGAATACGCTTTTAATTCTACTGATGAACTGCTGCAAAAGGGTGCAAAAATTGATGCTGTGATA
GCGGGGGATGATGCTTTAGCAGGAGGAATTATAGAGGCTTTGTCAGAGCATAGATTGGCGGGAAAAGTATTGGTTGCAGC
TCAGGATGCTGACCTTGCTGCATGTCAAAGGATAGTGGAAGGAACTCAAGCTATGACAGTGTACAAACCAATTGATAAAT
TAGCGGAAGCTACAGCAAAAATGGCTATGAAACTTGCGAGAGGAGAAAAATTAGACATTAAAAATACCATATATGACGGA
AAATATTACGTTCCTTATTATGTTCTTGAACCAATTGCTGTTGATAAAACTAATATAGATGATACTGTAATAAAAGACGG
TTTTCACAATCGCGATGAGGTATACAGAAATGTGGCTAAATGA

Upstream 100 bases:

>100_bases
TACAGCGACCCAAATTATTTTAGTAAGATATTTAAAAAAGCTACAGGGATGACGCCTACAGAGTACAGATCGGCTATTTA
CAAAGGAGGGGGTGTAGTTG

Downstream 100 bases:

>100_bases
TTATTCAGGCTTTAAGCCTGTATTTTTTTGTCTCAAAAAAATACTGAGAAATAAGTTAAAAAATTTAGGTCGCCAAAAAA
GTAAAGGATAACAAAAAAAG

Product: monosaccharide-transporting ATPase

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MESKNVIKVIVAIVLMIILGVLVFLTVKHVVAYREVKNVNSNPLDKKGHKIKIGFSLGTLKEERWIKDRDIVMAKLRELG
AEVLVQNANNDDQDQLKQVRYLLDQKIDVLIIVPNDLEKASYAVSLAQKEGVKVISYDRLVTKSNVDLYISFDNVKVGKL
MAEYLVKRVPRGNYLIINGATTDNNTKMIKEGYDSVLKPKIESGDIKIVKEDWAPNWMTEYAFNSTDELLQKGAKIDAVI
AGDDALAGGIIEALSEHRLAGKVLVAAQDADLAACQRIVEGTQAMTVYKPIDKLAEATAKMAMKLARGEKLDIKNTIYDG
KYYVPYYVLEPIAVDKTNIDDTVIKDGFHNRDEVYRNVAK

Sequences:

>Translated_360_residues
MESKNVIKVIVAIVLMIILGVLVFLTVKHVVAYREVKNVNSNPLDKKGHKIKIGFSLGTLKEERWIKDRDIVMAKLRELG
AEVLVQNANNDDQDQLKQVRYLLDQKIDVLIIVPNDLEKASYAVSLAQKEGVKVISYDRLVTKSNVDLYISFDNVKVGKL
MAEYLVKRVPRGNYLIINGATTDNNTKMIKEGYDSVLKPKIESGDIKIVKEDWAPNWMTEYAFNSTDELLQKGAKIDAVI
AGDDALAGGIIEALSEHRLAGKVLVAAQDADLAACQRIVEGTQAMTVYKPIDKLAEATAKMAMKLARGEKLDIKNTIYDG
KYYVPYYVLEPIAVDKTNIDDTVIKDGFHNRDEVYRNVAK
>Mature_360_residues
MESKNVIKVIVAIVLMIILGVLVFLTVKHVVAYREVKNVNSNPLDKKGHKIKIGFSLGTLKEERWIKDRDIVMAKLRELG
AEVLVQNANNDDQDQLKQVRYLLDQKIDVLIIVPNDLEKASYAVSLAQKEGVKVISYDRLVTKSNVDLYISFDNVKVGKL
MAEYLVKRVPRGNYLIINGATTDNNTKMIKEGYDSVLKPKIESGDIKIVKEDWAPNWMTEYAFNSTDELLQKGAKIDAVI
AGDDALAGGIIEALSEHRLAGKVLVAAQDADLAACQRIVEGTQAMTVYKPIDKLAEATAKMAMKLARGEKLDIKNTIYDG
KYYVPYYVLEPIAVDKTNIDDTVIKDGFHNRDEVYRNVAK

Specific function: Involved in the high-affinity D-xylose membrane transport system. Binds with high affinity to xylose [H]

COG id: COG4213

COG function: function code G; ABC-type xylose transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1789990, Length=306, Percent_Identity=46.078431372549, Blast_Score=283, Evalue=1e-77,
Organism=Escherichia coli, GI1790192, Length=265, Percent_Identity=24.9056603773585, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761
- InterPro:   IPR013456 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 40274; Mature: 40274

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESKNVIKVIVAIVLMIILGVLVFLTVKHVVAYREVKNVNSNPLDKKGHKIKIGFSLGTL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCC
KEERWIKDRDIVMAKLRELGAEVLVQNANNDDQDQLKQVRYLLDQKIDVLIIVPNDLEKA
CHHHHCCHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHH
SYAVSLAQKEGVKVISYDRLVTKSNVDLYISFDNVKVGKLMAEYLVKRVPRGNYLIINGA
HHHHHHHHHCCCEEEEECCEEEECCCEEEEEECCEEHHHHHHHHHHHHCCCCCEEEEECC
TTDNNTKMIKEGYDSVLKPKIESGDIKIVKEDWAPNWMTEYAFNSTDELLQKGAKIDAVI
CCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHCCCCHHHHHHCCCCEEEEE
AGDDALAGGIIEALSEHRLAGKVLVAAQDADLAACQRIVEGTQAMTVYKPIDKLAEATAK
ECCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCHHEEHHHHHHHHHHHHHH
MAMKLARGEKLDIKNTIYDGKYYVPYYVLEPIAVDKTNIDDTVIKDGFHNRDEVYRNVAK
HHHHHHCCCCCCCCCEEECCEEEECEEEECCEEECCCCCCHHHHHCCCCCHHHHHHHHCC
>Mature Secondary Structure
MESKNVIKVIVAIVLMIILGVLVFLTVKHVVAYREVKNVNSNPLDKKGHKIKIGFSLGTL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCC
KEERWIKDRDIVMAKLRELGAEVLVQNANNDDQDQLKQVRYLLDQKIDVLIIVPNDLEKA
CHHHHCCHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHH
SYAVSLAQKEGVKVISYDRLVTKSNVDLYISFDNVKVGKLMAEYLVKRVPRGNYLIINGA
HHHHHHHHHCCCEEEEECCEEEECCCEEEEEECCEEHHHHHHHHHHHHCCCCCEEEEECC
TTDNNTKMIKEGYDSVLKPKIESGDIKIVKEDWAPNWMTEYAFNSTDELLQKGAKIDAVI
CCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHCCCCHHHHHHCCCCEEEEE
AGDDALAGGIIEALSEHRLAGKVLVAAQDADLAACQRIVEGTQAMTVYKPIDKLAEATAK
ECCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCHHEEHHHHHHHHHHHHHH
MAMKLARGEKLDIKNTIYDGKYYVPYYVLEPIAVDKTNIDDTVIKDGFHNRDEVYRNVAK
HHHHHHCCCCCCCCCEEECCEEEECEEEECCEEECCCCCCHHHHHCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]