Click here to switch to the map view.

The map label for this gene is rpoD

Identifier: 165933888

GI number:

Start: 1232333

End: 1234237

Strand: Reverse

Name: rpoD

Synonym: RrIowa_1554

Alternate gene names: NA

Gene position: NA

Preceding gene: 165933889

Following gene: 165933887

Centisome position: NA

GC content: NA

Gene sequence:

>1905_bases
ATGAGCAATAGCAATATAGACAATGATCTAGATAAAATAGATAGTTTACTTAAAAAAGCTAAATCTAAAAAGATACCGGT
CACTTATGATGATATAAACAACGCTCTTCCTCTTAATAAAAATCCTTCAATAAGACAATTAGAGGAAGCTATATTAAAAT
TTTCCGATGCAGGAGTAGATATTTTAGAATCTAATGAAGATGATGAAATTAAGCTTGATATCGGAATGGATGAAGAATTT
AAGCTATCTACCAATGTTGATAATGAACCTGAGGATGAGGTAGAAGAAGAAAATATAGGTACTACCGATGATCCTGTAAG
ATTATATCTTAAGGATATGGGGGGAGTCGATCTTTTAACTCGTGAACATGAAGTAGAAATAGCAAAAAGGATTGAGGAAG
GACATAAAACAATGACTGCTTCCTTATGTAGAAGCCCTATTGCTATGCGTTGTTTTATAGTATGGTATGAAGATTTAGTT
AATGAAAAAATGTTACTACGTGATCTGATAGATTTAGAAGCTAACATGTTACATGACGAAACACCCGAAAATGATGAAGA
ACATAGTAGTGAGACCGAAGGAGAAGAGCATGAGGATAATCACTTATCTATGTCTAGAGTAGAAACGCAGATATTACCTA
ATATTATAGAGCGTATGAAAAAGATTGCTTTTATCTGCGAAGAGCTACTCATTGAAGCTAAAAAATGTTATGAGAAATCT
TTTGAGCCAAAGGTTTTACAAAATAGCAAAAAATATAATAATTTGGAATTATTAATAAATGAAGTTTCGGAAATACATTT
TAATTCTAAAAGAACGGAAGAAATTTTAGGTAAGATGTATGGAATAAATCGTGATTTAATTAATAAAGAAACAGCTTTTT
TAAAACTTGCTGAAAAATATGGAGTAACTCGCCAAAATTTCCTTGATGAATATATAGGATCGGTTATCAATGCAGCATGG
AAAGAAAAAATGCTGAAAAATAAAAAAGTCGCTTGGAAAGAGTTAATGACTAAAGAATCGGATTATATAGATCAAATGAT
TGCTGAATTATCGGTTATAGAATCTAAAACCGGTCTTTTAGTTAATGATTTTAAAAAACTAGTGAATACTATACAAAAAA
GCGAGAGACAAACGCTACAAGCAAAAAAAGATATGATAGAAGCGAATTTACGTTTAGTTATATCTATTGCTAAAAAATAC
GCTAATAGAGGATTGCAGTTTTTAGATTTAATTCAAGAAGGTAATATAGGACTTATGAAAGCAGTGGATAAATTTGAATA
TCGCCGTGGTTATAAATTCTCTACCTATGCTACGTGGTGGATTAGACAAGCTATAACAAGAGCTATTGCCGATCAAGCAA
GGACTATACGTATTCCTGTGCATATGATTGAAACAATTAATAAGATACTACGTACTTCAAGACAAATGCTTAATGAACTC
GGATACGAACCAACAGCAACGGAAATCGCTAACCGTCTTTCAATGCCGCTTGATAAAGTGCGTAAAGTCATGAAAATAGC
TAAAGAACCTATAAGTCTTGAGAATCCCGTAGGTGATGATAGTGACGGCGGTCAATTAGGCGATTTTATCGAAGATAAGA
ATGCAGTAGCACCGATTGATGCGGCAATTCAGTCAAATTTACGAGAAGTTACCACTAGAGTACTTGCCACCCTTACGCCT
CGTGAAGAAAGAGTGCTTAGAATGCGTTTCGGTATAGGTATGAATACTGACCATACATTAGAAGAAGTAGGGCAGCAATT
TAAAGTAACTAGAGAACGTATAAGACAAATCGAGTCAAAAGCTTTAAGAAAGTTACAACATCCTATTAGATCCAAAAAAC
TTAATAGCTTTAGAAGCGGAGGAAAGCGTGGTGATGGTAATCCATCGGATTTACTAGAAGCATGA

Upstream 100 bases:

>100_bases
TTGCAAATGAACTGCAAGTTTTAAACGAATCTTTTATTAATCACACGATAACTTAATTATTTCAAACTTCTTTTAAAAGA
AAAAAGCATATAGGTATTTA

Downstream 100 bases:

>100_bases
TAATACTTATACTGTCATCCTGTGATTTGGGATCTCAGGACACGGGCTGTGATACAAGATCCCGTGGTCAAGCCACGGGA
TGACAGTGGGCTATTATGTA

Product: RNA polymerase sigma factor RpoD

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>634_residues
MSNSNIDNDLDKIDSLLKKAKSKKIPVTYDDINNALPLNKNPSIRQLEEAILKFSDAGVDILESNEDDEIKLDIGMDEEF
KLSTNVDNEPEDEVEEENIGTTDDPVRLYLKDMGGVDLLTREHEVEIAKRIEEGHKTMTASLCRSPIAMRCFIVWYEDLV
NEKMLLRDLIDLEANMLHDETPENDEEHSSETEGEEHEDNHLSMSRVETQILPNIIERMKKIAFICEELLIEAKKCYEKS
FEPKVLQNSKKYNNLELLINEVSEIHFNSKRTEEILGKMYGINRDLINKETAFLKLAEKYGVTRQNFLDEYIGSVINAAW
KEKMLKNKKVAWKELMTKESDYIDQMIAELSVIESKTGLLVNDFKKLVNTIQKSERQTLQAKKDMIEANLRLVISIAKKY
ANRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKILRTSRQMLNEL
GYEPTATEIANRLSMPLDKVRKVMKIAKEPISLENPVGDDSDGGQLGDFIEDKNAVAPIDAAIQSNLREVTTRVLATLTP
REERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALRKLQHPIRSKKLNSFRSGGKRGDGNPSDLLEA

Sequences:
NA

Specific function: NA

COG id: COG0568

COG function: function code K; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA