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The map label for this gene is ytfH [H]

Identifier: 162149536

GI number: 162149536

Start: 3859107

End: 3859499

Strand: Direct

Name: ytfH [H]

Synonym: GDI_3774

Alternate gene names: 162149536

Gene position: 3859107-3859499 (Clockwise)

Preceding gene: 162149534

Following gene: 162149537

Centisome position: 97.84

GC content: 65.39

Gene sequence:

>393_bases
TTGATACGCGGGAACATGCATGTAACCGGGGAGGCACCCGATCCGGGCCAGGGAAACTGCCGCAAGATCAGTCCGGTCCT
GGCGCGCCTGGGCGACAAATGGAGCGTGCTGATCGTCATGCAACTGGGCAACGGGCCGCGCCGGTTCAATGAAATCCGCC
GCATGGTCGACGGCATTTCCCAGCGCATGCTGACCCTGACCCTGCGCGGGCTGGAGCGCGACGGCATGGTAACGCGCACG
GTCTATCCGACCATCCCGCCCCGCGTGGACTACGAACTGACGCCGCTGGGCCGGTCGCTGCGCGAACCGGTGCAGGCGCT
GGGGACCTGGGCGATGGCCAACCTGGACAAGATCGAGATGGCGCAACGGGAATTCGATAGCCGGAAAGCGTGA

Upstream 100 bases:

>100_bases
GCGTCGAGATGCAGGAGTTTCATTGCGTCGGTCCTAGGTATATGTTTGTAACCGAGGATATGTTTGCCACTGTCACCACG
GCGCGCAAGGGGGCACATTC

Downstream 100 bases:

>100_bases
GGGATCAGGGCACGCGAACCAAATAGCGTCGTGACGAGGTGCCCGGCGGATGCGTGAATATCGCGGTGAAGGCGGCGGGA
TGTAAGACTGGCAGCTTGCG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MIRGNMHVTGEAPDPGQGNCRKISPVLARLGDKWSVLIVMQLGNGPRRFNEIRRMVDGISQRMLTLTLRGLERDGMVTRT
VYPTIPPRVDYELTPLGRSLREPVQALGTWAMANLDKIEMAQREFDSRKA

Sequences:

>Translated_130_residues
MIRGNMHVTGEAPDPGQGNCRKISPVLARLGDKWSVLIVMQLGNGPRRFNEIRRMVDGISQRMLTLTLRGLERDGMVTRT
VYPTIPPRVDYELTPLGRSLREPVQALGTWAMANLDKIEMAQREFDSRKA
>Mature_130_residues
MIRGNMHVTGEAPDPGQGNCRKISPVLARLGDKWSVLIVMQLGNGPRRFNEIRRMVDGISQRMLTLTLRGLERDGMVTRT
VYPTIPPRVDYELTPLGRSLREPVQALGTWAMANLDKIEMAQREFDSRKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=93, Percent_Identity=43.010752688172, Blast_Score=94, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 14689; Mature: 14689

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRGNMHVTGEAPDPGQGNCRKISPVLARLGDKWSVLIVMQLGNGPRRFNEIRRMVDGIS
CCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHH
QRMLTLTLRGLERDGMVTRTVYPTIPPRVDYELTPLGRSLREPVQALGTWAMANLDKIEM
HHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCHHHHH
AQREFDSRKA
HHHHHHCCCC
>Mature Secondary Structure
MIRGNMHVTGEAPDPGQGNCRKISPVLARLGDKWSVLIVMQLGNGPRRFNEIRRMVDGIS
CCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHH
QRMLTLTLRGLERDGMVTRTVYPTIPPRVDYELTPLGRSLREPVQALGTWAMANLDKIEM
HHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCHHHHH
AQREFDSRKA
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]