Definition | Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genome. |
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Accession | NC_010125 |
Length | 3,944,163 |
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The map label for this gene is 162149506
Identifier: 162149506
GI number: 162149506
Start: 3826417
End: 3827532
Strand: Direct
Name: 162149506
Synonym: GDI_3744
Alternate gene names: NA
Gene position: 3826417-3827532 (Clockwise)
Preceding gene: 162149505
Following gene: 162149507
Centisome position: 97.01
GC content: 70.7
Gene sequence:
>1116_bases ATGACCGTTCCGGCATCCGGCACGCTGGCGGGGCGCCAGCTTGTCACCGACCTGCAATCCTTCGGCCTGCAGGTCGACGG GCAGGTCGGCGGGATTGCCCGCAAGGGCGGGGCCGGTCCGTCGGACCACAGGACGGTCACCATCGCGGGCCAGACCGTGA TGGTCCCGGTCTATACGGCGGGTGCGCGGCGGTCGCCGTTCCAGGCCGGGCCGCCGGGCGCCGACGGGTCCCACGTGCTG GTGCGGGACGGCCGGCCGGTCGGAACCATCCGCTTTCCCGCGCCGCCGCGTTTCTACGGCCTGACGACGGCGGACGGCGT GCCCTACTGGAAGATCGCGCTGCTGCATGGGCGCGACACGCTGGCCACCACCGTGCACCAGACCTGCATCCGCTATGCCG ACCGGCGCACGTCCTGCCAGTTCTGCGCCATCGGCCAGTCGCTGGAGGCGGGCCGTACGATCGCCTACAAGACGCCGCAG CAGCTTGCCGAGGTCGCGAAGGCGGCGGTGGACCTGGACCAGGTCCGCGACATGGTCCTGACCACGGGAACGCCGAATAT CGTCGATCGCGGCGCCGCTGTGCTGGCGGAGTCGGCCCGCGCCATCAAGGCGGCGGTCGACCTGCCGCTTCAGGTCCAGT GCGAGCCGCCGCGCGACCATGACTGGTTCCAGCGCTTGCGCGATGTGGGGGCCGATACCCTGGGCATGCATCTGGAAGCC GCGACGCAGCGCGTGCGCGAGCGGATCATGCCCGGCAAGGCCACCGTCAGCGTCGATCGCTACATGGACGCCTTCGCCAG CGCGGTTCCCGTCTTCGGGCGGGGGCAGGTCAACACCTATATCCTGGCCGGGCTGGGCGATACCGCCGAGGAGATCCTGG CGCTGGCCGGGCGGCTGATCGCGCTGGGCGTCTATCCCTTCGTGGTGCCGTTCGTACCTATTTCGGGCACCCCGCTGGAA GACCATGCGCCGCCTTCGGCGGAGTTCATGGCGTCGCTCTTCACGCCGCTGGGCAAGATGCTGCGCACGGCGGGGATGAC ATCCAGCGACATCCGCGCCGGGTGCGGGCGGTGCGGGGCGTGTTCCTCGCTCTCGGCCTACGAGGCTGCGGCATGA
Upstream 100 bases:
>100_bases GCCATTACGCGCGCCCCGAACTGCTGAGCCTGCTGCTGGACCGGCGTCCGGCCCGCACCGTCCATTATGTGGACGACGCG GCGTGCGAAGGAGGTGCGCC
Downstream 100 bases:
>100_bases TGGCGGAGGGAAGCATGATGCTGGACGGGCTGGACCCGCGTCCGTTCGTGCCCATGGAATATGTCGTGCGCCTGGCGCGC ACGCCGTGGGAGGTCACGGG
Product: hypothetical protein
Products: NA
Alternate protein names: Radical SAM Domain-Containing Protein; Elongator /MiaB/NifB; Biotin Synthase-Related; Lipoic Acid Synthetase; Oxidoreductase; Iron-Molybdenum Cofactorbiosynthesis Nitrogenase NifB
Number of amino acids: Translated: 371; Mature: 370
Protein sequence:
>371_residues MTVPASGTLAGRQLVTDLQSFGLQVDGQVGGIARKGGAGPSDHRTVTIAGQTVMVPVYTAGARRSPFQAGPPGADGSHVL VRDGRPVGTIRFPAPPRFYGLTTADGVPYWKIALLHGRDTLATTVHQTCIRYADRRTSCQFCAIGQSLEAGRTIAYKTPQ QLAEVAKAAVDLDQVRDMVLTTGTPNIVDRGAAVLAESARAIKAAVDLPLQVQCEPPRDHDWFQRLRDVGADTLGMHLEA ATQRVRERIMPGKATVSVDRYMDAFASAVPVFGRGQVNTYILAGLGDTAEEILALAGRLIALGVYPFVVPFVPISGTPLE DHAPPSAEFMASLFTPLGKMLRTAGMTSSDIRAGCGRCGACSSLSAYEAAA
Sequences:
>Translated_371_residues MTVPASGTLAGRQLVTDLQSFGLQVDGQVGGIARKGGAGPSDHRTVTIAGQTVMVPVYTAGARRSPFQAGPPGADGSHVL VRDGRPVGTIRFPAPPRFYGLTTADGVPYWKIALLHGRDTLATTVHQTCIRYADRRTSCQFCAIGQSLEAGRTIAYKTPQ QLAEVAKAAVDLDQVRDMVLTTGTPNIVDRGAAVLAESARAIKAAVDLPLQVQCEPPRDHDWFQRLRDVGADTLGMHLEA ATQRVRERIMPGKATVSVDRYMDAFASAVPVFGRGQVNTYILAGLGDTAEEILALAGRLIALGVYPFVVPFVPISGTPLE DHAPPSAEFMASLFTPLGKMLRTAGMTSSDIRAGCGRCGACSSLSAYEAAA >Mature_370_residues TVPASGTLAGRQLVTDLQSFGLQVDGQVGGIARKGGAGPSDHRTVTIAGQTVMVPVYTAGARRSPFQAGPPGADGSHVLV RDGRPVGTIRFPAPPRFYGLTTADGVPYWKIALLHGRDTLATTVHQTCIRYADRRTSCQFCAIGQSLEAGRTIAYKTPQQ LAEVAKAAVDLDQVRDMVLTTGTPNIVDRGAAVLAESARAIKAAVDLPLQVQCEPPRDHDWFQRLRDVGADTLGMHLEAA TQRVRERIMPGKATVSVDRYMDAFASAVPVFGRGQVNTYILAGLGDTAEEILALAGRLIALGVYPFVVPFVPISGTPLED HAPPSAEFMASLFTPLGKMLRTAGMTSSDIRAGCGRCGACSSLSAYEAAA
Specific function: Unknown
COG id: COG2516
COG function: function code R; Biotin synthase-related enzyme
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39187; Mature: 39056
Theoretical pI: Translated: 8.28; Mature: 8.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVPASGTLAGRQLVTDLQSFGLQVDGQVGGIARKGGAGPSDHRTVTIAGQTVMVPVYTA CCCCCCCCHHHHHHHHHHHHCCEEECCCCCCEECCCCCCCCCCCEEEEECCEEEEEEEEC GARRSPFQAGPPGADGSHVLVRDGRPVGTIRFPAPPRFYGLTTADGVPYWKIALLHGRDT CCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCEEECCCCCCCCEEEEEEEECCHH LATTVHQTCIRYADRRTSCQFCAIGQSLEAGRTIAYKTPQQLAEVAKAAVDLDQVRDMVL HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEECCHHHHHHHHHHHHCHHHHHHHEE TTGTPNIVDRGAAVLAESARAIKAAVDLPLQVQCEPPRDHDWFQRLRDVGADTLGMHLEA ECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHH ATQRVRERIMPGKATVSVDRYMDAFASAVPVFGRGQVNTYILAGLGDTAEEILALAGRLI HHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH ALGVYPFVVPFVPISGTPLEDHAPPSAEFMASLFTPLGKMLRTAGMTSSDIRAGCGRCGA HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCC CSSLSAYEAAA CCCCCHHHCCC >Mature Secondary Structure TVPASGTLAGRQLVTDLQSFGLQVDGQVGGIARKGGAGPSDHRTVTIAGQTVMVPVYTA CCCCCCCHHHHHHHHHHHHCCEEECCCCCCEECCCCCCCCCCCEEEEECCEEEEEEEEC GARRSPFQAGPPGADGSHVLVRDGRPVGTIRFPAPPRFYGLTTADGVPYWKIALLHGRDT CCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCEEECCCCCCCCEEEEEEEECCHH LATTVHQTCIRYADRRTSCQFCAIGQSLEAGRTIAYKTPQQLAEVAKAAVDLDQVRDMVL HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEECCHHHHHHHHHHHHCHHHHHHHEE TTGTPNIVDRGAAVLAESARAIKAAVDLPLQVQCEPPRDHDWFQRLRDVGADTLGMHLEA ECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHH ATQRVRERIMPGKATVSVDRYMDAFASAVPVFGRGQVNTYILAGLGDTAEEILALAGRLI HHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH ALGVYPFVVPFVPISGTPLEDHAPPSAEFMASLFTPLGKMLRTAGMTSSDIRAGCGRCGA HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCC CSSLSAYEAAA CCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA