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The map label for this gene is yciR [C]

Identifier: 162149427

GI number: 162149427

Start: 3740439

End: 3742517

Strand: Direct

Name: yciR [C]

Synonym: GDI_3665

Alternate gene names: 162149427

Gene position: 3740439-3742517 (Clockwise)

Preceding gene: 162149426

Following gene: 162149430

Centisome position: 94.83

GC content: 68.73

Gene sequence:

>2079_bases
CTGGGCTTTCGCCTGCTGGTGGACGAGGCGCGGGATTATGCGGTGTACATGCTGGACGACGCGGGGCGGGTCACCACCTG
GAACGTCGGCGCGCAGCGGCTGACGGGATATTCCGCGCGCGAGGTGCTGGGGCGGGTGGGCGGCCGCCTGTATTCCGAGG
CCGAGCGGCGCGACGGCGTGCCGCAGCGGCTGCTGGCCGAGGCGCGCGAGGGCACGGTGGCGCGCGAGGGATGGCGCTAT
CGCAAGGACGGAAGCCCGTTCTGGGCGTCGGTCACGATCAACCCGGTCCGGGACGAGGCCGGGGCCCAGGTCGGCTTTGC
CGTGAGCGTGCGCGACGACACCAAGCGCAAGACCGATGCCGACCGGATCGCGCAGATGACGCGCAATCTGGACATCGCGC
TGCAGAACATGTCGCACGGGCTGTGCCTGTTCGGTGCCGATGCGCGGCTGATCCTGGCCAACGGGCGCTATGCCGAGATC
TTCGGCCTGCCCGAGGGCGCGGCGAAGCCGGGCATGACCTACCGGGCGCTGCTGACGCTGGTCTATACCCGCCGGGGCCT
GTCGGCCGAGGCCGTGCGGCGGCGGGTCGACGGCACGTTCGAGCGCCAGATGGCCCTGGTCCGCAGGCGGCGGGGCGGGA
CCTCGGTCCTGCATCCCCGGCCCGACATGGCGGTGCAGGTGCAGTACAGAATCATGGCCGACGGCGGATGGGTGGCGACC
TACGAGGACATTACCGAACGGCTGAGGGCGGAAGCGCGCATCACCTATCTGGCGCATCATGATTCGCTGACCGGGCTGGC
CAACCGCGCCTGGTTCACCGAGGCGCTGGACCGCGCCCTGACGCTGGCGGCCAGCGGCACGCAGCGGGTGGCGGTGATCG
GCATCGACCTGGACAAGTTCAAGGAGATCAACGACCAGCACGGCCATGCGGTGGGCGACCAGGTGCTGGTGACCCTGGCC
GCGCGCATCCGTGACGTCCTGGAGGACGACGAACTGGTCGCCCGGCTGGGCGGCGACGAATTCGCCGCGGCCAAGCGGTT
CGACGACATGGCCGAACTGAACGCCTTCATCGGCCGGCTGGAGGAGTGCCTGTCGCAGCCCATCGGGGTGGACGGGTTCG
AACTGCGGCCCAATGCCAGCATCGGCGTATCGCTGTACCCCCGCGACGCGGAAACGGTCGAGGCGCTGATGGGCGACGCG
GACCTGGCGATGTATCGCGCCAAGGGGGCGTTGCGCGAGCATGTGTGCTTCTACGAGGCGGAGATGGACGAGGCGGCGCG
CGACCGCCGCAGCCTGGTCGCGGCGTTGTGGGAGGCGGTGGACCACCATCAGTTCCATCTGCATTTCCAGGTGCAGAAAC
GCGTGGCCACCGGCGAGATCACCGGCTTCGAGGTGCTGCTGCGCTGGCACCACCCGGAACGCGGCTGGGTGGCGCCGATG
GATTTCATTCCCCTGGCCGAGGAATGCGGCGCCATCCTGCCGATCGGCGAGTGGGTGCTGCGCCAGGCCTGCCGCGAGGC
CGCCCGCTGGTCCCGCCCCTACCGGATCGCGGTCAACCTGTCGGCCGTGCAGCTGGGCGAGGACGGGCTGGCCGACATGG
TGCGCGCGATCCTGGAGGAAACCGGCCTGGCCCCGTCGCGGCTGGAACTGGAGATTACCGAGACCGCGATCATCGTGGAC
AAGCAGCAGTCGCTGCGCACGCTGCAGCGGATCAAGGCGCTGGGGGTGTCGATTTCGATCGACGATTTCGGCGTGGGCTA
TTCGTCGCTGGAAACGCTGCGGACCTTCCCCTTCGACAAGATCAAGATGGACCGCAGCTTCATGACCGAGATCGAGCGGT
CGCCGGAATCGAAGGCGATCCTGCGCGCGATCCTGGCGCTGGGCCGCAGCCTGACCATTCCGGTCCTGGCCGAGGGCGTG
GAGACGCAGGTCCAGCTCGACATCCTGCATGCCGAGGGCTGCATCGAGGCCCAGGGATATCTGCTGGGCCGGCCGAAGCC
GATGGAAATCGACGCCGAGCCGTACCGGCCGCTGGACGAGGACGGCTGGAGCGATTTGTCATTTGAGAAAATCACATGA

Upstream 100 bases:

>100_bases
GCAGTGGGAAAAAGAACCATCACGGTTCATACATAATCCGCACCACCAAATCCCGGGACAAAACACCTATCGCGCCTGAC
TGGCGGCCTGGCGGAACGAG

Downstream 100 bases:

>100_bases
ATTTCTCCAGTCTTTTGCTTTTCTGGTATCTTCACGTGACTAGCGTCAGGACAGCGTGCCGGCGCGCATGATCGGCATGG
ATGTCTGACCTTCCGGGTGG

Product: GGDEF family signaling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 692; Mature: 691

Protein sequence:

>692_residues
MGFRLLVDEARDYAVYMLDDAGRVTTWNVGAQRLTGYSAREVLGRVGGRLYSEAERRDGVPQRLLAEAREGTVAREGWRY
RKDGSPFWASVTINPVRDEAGAQVGFAVSVRDDTKRKTDADRIAQMTRNLDIALQNMSHGLCLFGADARLILANGRYAEI
FGLPEGAAKPGMTYRALLTLVYTRRGLSAEAVRRRVDGTFERQMALVRRRRGGTSVLHPRPDMAVQVQYRIMADGGWVAT
YEDITERLRAEARITYLAHHDSLTGLANRAWFTEALDRALTLAASGTQRVAVIGIDLDKFKEINDQHGHAVGDQVLVTLA
ARIRDVLEDDELVARLGGDEFAAAKRFDDMAELNAFIGRLEECLSQPIGVDGFELRPNASIGVSLYPRDAETVEALMGDA
DLAMYRAKGALREHVCFYEAEMDEAARDRRSLVAALWEAVDHHQFHLHFQVQKRVATGEITGFEVLLRWHHPERGWVAPM
DFIPLAEECGAILPIGEWVLRQACREAARWSRPYRIAVNLSAVQLGEDGLADMVRAILEETGLAPSRLELEITETAIIVD
KQQSLRTLQRIKALGVSISIDDFGVGYSSLETLRTFPFDKIKMDRSFMTEIERSPESKAILRAILALGRSLTIPVLAEGV
ETQVQLDILHAEGCIEAQGYLLGRPKPMEIDAEPYRPLDEDGWSDLSFEKIT

Sequences:

>Translated_692_residues
MGFRLLVDEARDYAVYMLDDAGRVTTWNVGAQRLTGYSAREVLGRVGGRLYSEAERRDGVPQRLLAEAREGTVAREGWRY
RKDGSPFWASVTINPVRDEAGAQVGFAVSVRDDTKRKTDADRIAQMTRNLDIALQNMSHGLCLFGADARLILANGRYAEI
FGLPEGAAKPGMTYRALLTLVYTRRGLSAEAVRRRVDGTFERQMALVRRRRGGTSVLHPRPDMAVQVQYRIMADGGWVAT
YEDITERLRAEARITYLAHHDSLTGLANRAWFTEALDRALTLAASGTQRVAVIGIDLDKFKEINDQHGHAVGDQVLVTLA
ARIRDVLEDDELVARLGGDEFAAAKRFDDMAELNAFIGRLEECLSQPIGVDGFELRPNASIGVSLYPRDAETVEALMGDA
DLAMYRAKGALREHVCFYEAEMDEAARDRRSLVAALWEAVDHHQFHLHFQVQKRVATGEITGFEVLLRWHHPERGWVAPM
DFIPLAEECGAILPIGEWVLRQACREAARWSRPYRIAVNLSAVQLGEDGLADMVRAILEETGLAPSRLELEITETAIIVD
KQQSLRTLQRIKALGVSISIDDFGVGYSSLETLRTFPFDKIKMDRSFMTEIERSPESKAILRAILALGRSLTIPVLAEGV
ETQVQLDILHAEGCIEAQGYLLGRPKPMEIDAEPYRPLDEDGWSDLSFEKIT
>Mature_691_residues
GFRLLVDEARDYAVYMLDDAGRVTTWNVGAQRLTGYSAREVLGRVGGRLYSEAERRDGVPQRLLAEAREGTVAREGWRYR
KDGSPFWASVTINPVRDEAGAQVGFAVSVRDDTKRKTDADRIAQMTRNLDIALQNMSHGLCLFGADARLILANGRYAEIF
GLPEGAAKPGMTYRALLTLVYTRRGLSAEAVRRRVDGTFERQMALVRRRRGGTSVLHPRPDMAVQVQYRIMADGGWVATY
EDITERLRAEARITYLAHHDSLTGLANRAWFTEALDRALTLAASGTQRVAVIGIDLDKFKEINDQHGHAVGDQVLVTLAA
RIRDVLEDDELVARLGGDEFAAAKRFDDMAELNAFIGRLEECLSQPIGVDGFELRPNASIGVSLYPRDAETVEALMGDAD
LAMYRAKGALREHVCFYEAEMDEAARDRRSLVAALWEAVDHHQFHLHFQVQKRVATGEITGFEVLLRWHHPERGWVAPMD
FIPLAEECGAILPIGEWVLRQACREAARWSRPYRIAVNLSAVQLGEDGLADMVRAILEETGLAPSRLELEITETAIIVDK
QQSLRTLQRIKALGVSISIDDFGVGYSSLETLRTFPFDKIKMDRSFMTEIERSPESKAILRAILALGRSLTIPVLAEGVE
TQVQLDILHAEGCIEAQGYLLGRPKPMEIDAEPYRPLDEDGWSDLSFEKIT

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=433, Percent_Identity=36.2586605080831, Blast_Score=295, Evalue=9e-81,
Organism=Escherichia coli, GI87081921, Length=679, Percent_Identity=28.4241531664212, Blast_Score=233, Evalue=2e-62,
Organism=Escherichia coli, GI226510982, Length=421, Percent_Identity=30.4038004750594, Blast_Score=191, Evalue=2e-49,
Organism=Escherichia coli, GI87081845, Length=212, Percent_Identity=34.9056603773585, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1787055, Length=236, Percent_Identity=34.3220338983051, Blast_Score=128, Evalue=2e-30,
Organism=Escherichia coli, GI87081743, Length=237, Percent_Identity=29.957805907173, Blast_Score=122, Evalue=8e-29,
Organism=Escherichia coli, GI1786507, Length=241, Percent_Identity=32.3651452282158, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1790496, Length=239, Percent_Identity=30.5439330543933, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1788502, Length=271, Percent_Identity=29.8892988929889, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI87081980, Length=230, Percent_Identity=32.6086956521739, Blast_Score=116, Evalue=5e-27,
Organism=Escherichia coli, GI1788381, Length=469, Percent_Identity=26.4392324093817, Blast_Score=112, Evalue=1e-25,
Organism=Escherichia coli, GI1788849, Length=446, Percent_Identity=26.0089686098655, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87082096, Length=202, Percent_Identity=29.7029702970297, Blast_Score=100, Evalue=5e-22,
Organism=Escherichia coli, GI87081977, Length=179, Percent_Identity=31.8435754189944, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI87081881, Length=185, Percent_Identity=31.3513513513514, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1787802, Length=165, Percent_Identity=34.5454545454545, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1786584, Length=179, Percent_Identity=30.1675977653631, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788956, Length=165, Percent_Identity=35.1515151515151, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787410, Length=154, Percent_Identity=31.8181818181818, Blast_Score=73, Evalue=8e-14,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=32.7272727272727, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87082007, Length=184, Percent_Identity=30.4347826086957, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1788085, Length=175, Percent_Identity=29.1428571428571, Blast_Score=66, Evalue=8e-12,
Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=30.1204819277108, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI87081974, Length=82, Percent_Identity=40.2439024390244, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 77278; Mature: 77147

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFRLLVDEARDYAVYMLDDAGRVTTWNVGAQRLTGYSAREVLGRVGGRLYSEAERRDGV
CCCEEEEECCCCEEEEEEECCCCEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
PQRLLAEAREGTVAREGWRYRKDGSPFWASVTINPVRDEAGAQVGFAVSVRDDTKRKTDA
HHHHHHHHHCCCCHHCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCH
DRIAQMTRNLDIALQNMSHGLCLFGADARLILANGRYAEIFGLPEGAAKPGMTYRALLTL
HHHHHHHHCHHEEEECCCCCEEEEECCCEEEEECCCEEEEEECCCCCCCCCHHHHHHHHH
VYTRRGLSAEAVRRRVDGTFERQMALVRRRRGGTSVLHPRPDMAVQVQYRIMADGGWVAT
HHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCEEEE
YEDITERLRAEARITYLAHHDSLTGLANRAWFTEALDRALTLAASGTQRVAVIGIDLDKF
HHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEECCHHHH
KEINDQHGHAVGDQVLVTLAARIRDVLEDDELVARLGGDEFAAAKRFDDMAELNAFIGRL
HHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
EECLSQPIGVDGFELRPNASIGVSLYPRDAETVEALMGDADLAMYRAKGALREHVCFYEA
HHHHCCCCCCCCEEECCCCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEH
EMDEAARDRRSLVAALWEAVDHHQFHLHFQVQKRVATGEITGFEVLLRWHHPERGWVAPM
HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEHHCCCCCCEEEEEEEECCCCCCCCCC
DFIPLAEECGAILPIGEWVLRQACREAARWSRPYRIAVNLSAVQLGEDGLADMVRAILEE
CCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCHHHHHHHHHHH
TGLAPSRLELEITETAIIVDKQQSLRTLQRIKALGVSISIDDFGVGYSSLETLRTFPFDK
HCCCCCEEEEEEEEEEEEEECHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHCCCHH
IKMDRSFMTEIERSPESKAILRAILALGRSLTIPVLAEGVETQVQLDILHAEGCIEAQGY
HHCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEHHHHCCCCCEEEEEEEECCCCCCCCCE
LLGRPKPMEIDAEPYRPLDEDGWSDLSFEKIT
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GFRLLVDEARDYAVYMLDDAGRVTTWNVGAQRLTGYSAREVLGRVGGRLYSEAERRDGV
CCEEEEECCCCEEEEEEECCCCEEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
PQRLLAEAREGTVAREGWRYRKDGSPFWASVTINPVRDEAGAQVGFAVSVRDDTKRKTDA
HHHHHHHHHCCCCHHCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCH
DRIAQMTRNLDIALQNMSHGLCLFGADARLILANGRYAEIFGLPEGAAKPGMTYRALLTL
HHHHHHHHCHHEEEECCCCCEEEEECCCEEEEECCCEEEEEECCCCCCCCCHHHHHHHHH
VYTRRGLSAEAVRRRVDGTFERQMALVRRRRGGTSVLHPRPDMAVQVQYRIMADGGWVAT
HHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCEEEE
YEDITERLRAEARITYLAHHDSLTGLANRAWFTEALDRALTLAASGTQRVAVIGIDLDKF
HHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEECCHHHH
KEINDQHGHAVGDQVLVTLAARIRDVLEDDELVARLGGDEFAAAKRFDDMAELNAFIGRL
HHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
EECLSQPIGVDGFELRPNASIGVSLYPRDAETVEALMGDADLAMYRAKGALREHVCFYEA
HHHHCCCCCCCCEEECCCCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEH
EMDEAARDRRSLVAALWEAVDHHQFHLHFQVQKRVATGEITGFEVLLRWHHPERGWVAPM
HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEHHCCCCCCEEEEEEEECCCCCCCCCC
DFIPLAEECGAILPIGEWVLRQACREAARWSRPYRIAVNLSAVQLGEDGLADMVRAILEE
CCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCHHHHHHHHHHH
TGLAPSRLELEITETAIIVDKQQSLRTLQRIKALGVSISIDDFGVGYSSLETLRTFPFDK
HCCCCCEEEEEEEEEEEEEECHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHCCCHH
IKMDRSFMTEIERSPESKAILRAILALGRSLTIPVLAEGVETQVQLDILHAEGCIEAQGY
HHCCHHHHHHHHCCCCHHHHHHHHHHHCCCCEEHHHHCCCCCEEEEEEEECCCCCCCCCE
LLGRPKPMEIDAEPYRPLDEDGWSDLSFEKIT
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]