Click here to switch to the map view.

The map label for this gene is ybaK [H]

Identifier: 162149275

GI number: 162149275

Start: 3606582

End: 3607082

Strand: Direct

Name: ybaK [H]

Synonym: GDI_3507

Alternate gene names: 162149275

Gene position: 3606582-3607082 (Clockwise)

Preceding gene: 162149274

Following gene: 162149276

Centisome position: 91.44

GC content: 70.06

Gene sequence:

>501_bases
ATGGCCAAGAAAAATTCCCATCCCCAGGCAACCGGCACCCAGGCCACCCAGGCCCTGACCCGTGCGGGAATCGCCTTCAC
CGCCGTCACCTACCATTATGATCCGGACGCCGACCGGCTGGGCGTGCAGGCCGCCGAAGCCATCGGCGAACCGCCCGCCC
ACGTCTACAAGACCCTGATGGCGGAGATCGACGGCCGCGCGGTCTGCGTGGTCGTCCCGTCGGACCACGAGGTCAGCATG
AAGAAGCTGGCCGCCGCCTTCGGCGGCAAGAGCGCGAAGATGATGAAGCCCGCCGACGCCGAACGCGTCACCGGCTACCG
CGTCGGCGGCATCAGTCCCTTCGGCCAGAAGAAGCGCGTCCCCACCGCCTTCGCCCGCCAGGCGGCGGACCTGCCCTACC
TCTACACCAACGGCGGCCAGCGCGGCCTCCAGGTCCGCCTGGCCCCCGACGACGCGCTGCGCGCCTGCGATGCCACCCTG
GCGGACCTGACGGCCGCATAA

Upstream 100 bases:

>100_bases
GGCGCGGCCATCGCCGCCCTGTGCCGGCCGGACGAGACCCGGCACGGGCAGCGTATCCGCGCATCCTGACGCGACCGCCC
CGCCCTGCTATAACACCGGC

Downstream 100 bases:

>100_bases
AGCATCGGCGGCCCCACGCCTTTGCGTCTCCCCCGGACCATCCGGTGGCGCGATGTCATGATTCCGAAAAGAAAATGGTA
CAAAACGGACACAAACCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MAKKNSHPQATGTQATQALTRAGIAFTAVTYHYDPDADRLGVQAAEAIGEPPAHVYKTLMAEIDGRAVCVVVPSDHEVSM
KKLAAAFGGKSAKMMKPADAERVTGYRVGGISPFGQKKRVPTAFARQAADLPYLYTNGGQRGLQVRLAPDDALRACDATL
ADLTAA

Sequences:

>Translated_166_residues
MAKKNSHPQATGTQATQALTRAGIAFTAVTYHYDPDADRLGVQAAEAIGEPPAHVYKTLMAEIDGRAVCVVVPSDHEVSM
KKLAAAFGGKSAKMMKPADAERVTGYRVGGISPFGQKKRVPTAFARQAADLPYLYTNGGQRGLQVRLAPDDALRACDATL
ADLTAA
>Mature_165_residues
AKKNSHPQATGTQATQALTRAGIAFTAVTYHYDPDADRLGVQAAEAIGEPPAHVYKTLMAEIDGRAVCVVVPSDHEVSMK
KLAAAFGGKSAKMMKPADAERVTGYRVGGISPFGQKKRVPTAFARQAADLPYLYTNGGQRGLQVRLAPDDALRACDATLA
DLTAA

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro). May compensate for the lack of Cys-tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak activity against Cys-tRNA(Cys) and Gly- tRNA(Gly), as wel

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=154, Percent_Identity=38.961038961039, Blast_Score=113, Evalue=8e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17514; Mature: 17383

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKNSHPQATGTQATQALTRAGIAFTAVTYHYDPDADRLGVQAAEAIGEPPAHVYKTLM
CCCCCCCCCCCCHHHHHHHHHCCEEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHH
AEIDGRAVCVVVPSDHEVSMKKLAAAFGGKSAKMMKPADAERVTGYRVGGISPFGQKKRV
HHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCHHCCCEEECCCCCCCCCCCC
PTAFARQAADLPYLYTNGGQRGLQVRLAPDDALRACDATLADLTAA
CHHHHHHHCCCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKKNSHPQATGTQATQALTRAGIAFTAVTYHYDPDADRLGVQAAEAIGEPPAHVYKTLM
CCCCCCCCCCCHHHHHHHHHCCEEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHH
AEIDGRAVCVVVPSDHEVSMKKLAAAFGGKSAKMMKPADAERVTGYRVGGISPFGQKKRV
HHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCHHCCCEEECCCCCCCCCCCC
PTAFARQAADLPYLYTNGGQRGLQVRLAPDDALRACDATLADLTAA
CHHHHHHHCCCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 3012467; 10493123 [H]