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The map label for this gene is nudF [H]

Identifier: 162148920

GI number: 162148920

Start: 3240868

End: 3241374

Strand: Direct

Name: nudF [H]

Synonym: GDI_3150

Alternate gene names: 162148920

Gene position: 3240868-3241374 (Clockwise)

Preceding gene: 162148919

Following gene: 162148921

Centisome position: 82.17

GC content: 72.19

Gene sequence:

>507_bases
ATGAACTCCCCCTCCCCCGTTTCGGCCGCGATCCTCGCGGTCGTCGTACGCGACAGGCGCCTGCTGCTGATCCGGCGGGC
CAACCCGCCGGACCAGGGCCTGTGGGGTTTTCCCGGCGGCCGCATCGAGCATGGCGAGACCGTCATGCAGGCCGCCGAGC
GCGAACTGCGCGAGGAAACCGGCTTCATCGCCCGGGCGCAGGGCGTGCTGACGGCATTCGACGTGCTGGACCACGCCCCG
GACGGTGCCCTGCGGTTCCATTACGTCATCGTCGTCGTGCGCTGCGCCGATTCGGGACAGGATACGGTGCGCGCGGCCGA
CGATGCGCTGGATGTCGACTGGTTCACGCTGGACCAGGTGCGCGACGCCCCCGAACGCATGAGCCCCGGCCTGCTGGAAC
TGGGCACGCTGGCCCTGTCGGACCGGGGCATCGCCCCGTGGCCCGTTCCCACCGCCGCCCCCCTGCGGCGGCGTCCGCCC
GTCCCCGCACAGGGCTCCACGCCATGA

Upstream 100 bases:

>100_bases
CAGTCCACGGCGATCTGGCTGCCGGTCGTCCCGTAACCGCCCGGCGCACAACGGCGTCACGGAGTGGCCGGAGGGGGAGT
CATGCGTCTATGATGGCCGC

Downstream 100 bases:

>100_bases
CGTCCCCCCGCCACGTCCTGCTGGTCGAGGACGAATCCGCCATCGCCGACCTGGTCCGCACGGCGCTGGAGGCGTCCGGC
CTGCGCGTCACCCCATGCGC

Product: nucleoside diphosphate

Products: NA

Alternate protein names: ADP-ribose diphosphatase; ADP-ribose phosphohydrolase; Adenosine diphosphoribose pyrophosphatase; ADPR-PPase [H]

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MNSPSPVSAAILAVVVRDRRLLLIRRANPPDQGLWGFPGGRIEHGETVMQAAERELREETGFIARAQGVLTAFDVLDHAP
DGALRFHYVIVVVRCADSGQDTVRAADDALDVDWFTLDQVRDAPERMSPGLLELGTLALSDRGIAPWPVPTAAPLRRRPP
VPAQGSTP

Sequences:

>Translated_168_residues
MNSPSPVSAAILAVVVRDRRLLLIRRANPPDQGLWGFPGGRIEHGETVMQAAERELREETGFIARAQGVLTAFDVLDHAP
DGALRFHYVIVVVRCADSGQDTVRAADDALDVDWFTLDQVRDAPERMSPGLLELGTLALSDRGIAPWPVPTAAPLRRRPP
VPAQGSTP
>Mature_168_residues
MNSPSPVSAAILAVVVRDRRLLLIRRANPPDQGLWGFPGGRIEHGETVMQAAERELREETGFIARAQGVLTAFDVLDHAP
DGALRFHYVIVVVRCADSGQDTVRAADDALDVDWFTLDQVRDAPERMSPGLLELGTLALSDRGIAPWPVPTAAPLRRRPP
VPAQGSTP

Specific function: Specific For Pyrimidine Substrates. Acts On 5-Methyl- Dctp, Ctp And Dctp In Decreasing Order. [C]

COG id: COG1051

COG function: function code F; ADP-ribose pyrophosphatase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020476
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797 [H]

Pfam domain/function: PF00293 NUDIX [H]

EC number: =3.6.1.13 [H]

Molecular weight: Translated: 18232; Mature: 18232

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSPSPVSAAILAVVVRDRRLLLIRRANPPDQGLWGFPGGRIEHGETVMQAAERELREET
CCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
GFIARAQGVLTAFDVLDHAPDGALRFHYVIVVVRCADSGQDTVRAADDALDVDWFTLDQV
CCEEHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCHHHHHCCCCCCCCEEEHHHH
RDAPERMSPGLLELGTLALSDRGIAPWPVPTAAPLRRRPPVPAQGSTP
HCCHHHCCCCHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNSPSPVSAAILAVVVRDRRLLLIRRANPPDQGLWGFPGGRIEHGETVMQAAERELREET
CCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
GFIARAQGVLTAFDVLDHAPDGALRFHYVIVVVRCADSGQDTVRAADDALDVDWFTLDQV
CCEEHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCHHHHHCCCCCCCCEEEHHHH
RDAPERMSPGLLELGTLALSDRGIAPWPVPTAAPLRRRPPVPAQGSTP
HCCHHHCCCCHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087; 9694840 [H]