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The map label for this gene is glcD [H]

Identifier: 161870385

GI number: 161870385

Start: 1451957

End: 1453324

Strand: Direct

Name: glcD [H]

Synonym: NMCC_1431

Alternate gene names: 161870385

Gene position: 1451957-1453324 (Clockwise)

Preceding gene: 161870384

Following gene: 161870397

Centisome position: 67.43

GC content: 52.05

Gene sequence:

>1368_bases
ATGCCTGACCTTCATACCGAATTTTCCCGACTCCTGCCGGCAGATGAAATTGCCGAACTTTCTCCGACGCTTTTAAAAGA
CCAGCGCAACCGCTTTACGTCTGCACCAGACATCATTTTGCAGCCGCGCAGCGTTGAAAGCGTGCAAACCATTATGCGTT
TTTGTTACGAACACCGCATTCCGGTTACGCCGCAAGGCGGCAATACCGGTTTGTGCGGCGCGGCAGTATCGGAAAACGGC
GTATTGCTGAACCTTTCCAAACTCAACCGCATCCGCAGCATCAATTTGTCAGACAACTGCATAACCGTCGAAGCAGGTTC
CGTACTCCAAACCGTCCAACAGGCAGCCGAAGCCTCAAACAGGCTGTTCCCACTCAGTCTCGCCAGCGAAGGCTCCTGTC
AAATCGGCGGCAACATCGCCTGCAATGCCGGAGGTTTGAACGTATTGCGTTACGGCACGATGCGCGACCTGATTATCGGT
TTGGAAGTCGTCCTCCCCAACGGCGAGCTGGTTTCCCATCTCCATCCCCTGCATAAAAACACCACCGGCTACGACCTGCG
CCATCTGTTTATCGGCAGCGAAGGCACACTGGGCATCATCACTGCCGCCACACTCAAGCTTTTTGCCCGTCCCTCGGACA
AGGCAACGGCATGGGTCGGCATACCCGACATCGAATCCGCCGTCCGCCTGCTGACCGAAACCCAAGCTCACTTTGCCGAA
CGCCTATGCAGTTTTGAGCTGATCGGCCGTTTTGCCGCCGAGTTGTCTTCCGAATTCAGCAAACTCCCCCTGCCGACACA
TTCAGAATGGCATATTTTACTTGAGTTGACCGACTCATTACCCGACAGCAATCTTGATGATCGGCTTGTCGAATTTCTTT
ATAAAAAAGGATTTACCGACAGCGTATTGGCACAAAGCGAACAAGAACGTATCCATATGTGGGCATTGCGCGAAAACATC
TCCGCATCGCAACGCAAACTGGGCACCAGCATCAAACACGATATTGCCATTCCTATCGGACGCGTTGCCGACTTTGTCCG
CCGGTGCGCCAAAGATTTGGAACAGAATTTTAAAGGCATACAAATCGTCTGCTTCGGACATCTTGGCGACGGCAGCCTGC
ACTACAATACTTTCCTGCCCGAAATCCTCAGCAATGAAGTCTATCGTTACGAAAACGACATCAACGACGCAGTTTATCGC
AACGTTCTTGCCTGCAACGGCACGATTGCCGCCGAACACGGCATAGGTATCATCAAAAAACAGTGGCTGGACAAAGTACG
CACGCCTGCCGAAATCGCCCTGATGAAAAGCATCAAACAACACCTTGATCCATATAACATTATGAATCCGGGCAAACTGC
TTCCGTAA

Upstream 100 bases:

>100_bases
GCTTGCAAAAAAGCAGGATACGTTCAGTATCCTGCTTTTTTGATTTTTCAGACGGCATCAGATTCCCTTCCTCAATCTTC
TCCCTACCCTTCCGACAAAC

Downstream 100 bases:

>100_bases
ATAACTGATTCAAAATGAAATTATAGGAAATATCATGGGAATGACAGCAACCTATCAACTGGTCGATAATGAAAAACTGG
CTTTGCTTAAAAACACCGAT

Product: oxidoreductase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 454

Protein sequence:

>455_residues
MPDLHTEFSRLLPADEIAELSPTLLKDQRNRFTSAPDIILQPRSVESVQTIMRFCYEHRIPVTPQGGNTGLCGAAVSENG
VLLNLSKLNRIRSINLSDNCITVEAGSVLQTVQQAAEASNRLFPLSLASEGSCQIGGNIACNAGGLNVLRYGTMRDLIIG
LEVVLPNGELVSHLHPLHKNTTGYDLRHLFIGSEGTLGIITAATLKLFARPSDKATAWVGIPDIESAVRLLTETQAHFAE
RLCSFELIGRFAAELSSEFSKLPLPTHSEWHILLELTDSLPDSNLDDRLVEFLYKKGFTDSVLAQSEQERIHMWALRENI
SASQRKLGTSIKHDIAIPIGRVADFVRRCAKDLEQNFKGIQIVCFGHLGDGSLHYNTFLPEILSNEVYRYENDINDAVYR
NVLACNGTIAAEHGIGIIKKQWLDKVRTPAEIALMKSIKQHLDPYNIMNPGKLLP

Sequences:

>Translated_455_residues
MPDLHTEFSRLLPADEIAELSPTLLKDQRNRFTSAPDIILQPRSVESVQTIMRFCYEHRIPVTPQGGNTGLCGAAVSENG
VLLNLSKLNRIRSINLSDNCITVEAGSVLQTVQQAAEASNRLFPLSLASEGSCQIGGNIACNAGGLNVLRYGTMRDLIIG
LEVVLPNGELVSHLHPLHKNTTGYDLRHLFIGSEGTLGIITAATLKLFARPSDKATAWVGIPDIESAVRLLTETQAHFAE
RLCSFELIGRFAAELSSEFSKLPLPTHSEWHILLELTDSLPDSNLDDRLVEFLYKKGFTDSVLAQSEQERIHMWALRENI
SASQRKLGTSIKHDIAIPIGRVADFVRRCAKDLEQNFKGIQIVCFGHLGDGSLHYNTFLPEILSNEVYRYENDINDAVYR
NVLACNGTIAAEHGIGIIKKQWLDKVRTPAEIALMKSIKQHLDPYNIMNPGKLLP
>Mature_454_residues
PDLHTEFSRLLPADEIAELSPTLLKDQRNRFTSAPDIILQPRSVESVQTIMRFCYEHRIPVTPQGGNTGLCGAAVSENGV
LLNLSKLNRIRSINLSDNCITVEAGSVLQTVQQAAEASNRLFPLSLASEGSCQIGGNIACNAGGLNVLRYGTMRDLIIGL
EVVLPNGELVSHLHPLHKNTTGYDLRHLFIGSEGTLGIITAATLKLFARPSDKATAWVGIPDIESAVRLLTETQAHFAER
LCSFELIGRFAAELSSEFSKLPLPTHSEWHILLELTDSLPDSNLDDRLVEFLYKKGFTDSVLAQSEQERIHMWALRENIS
ASQRKLGTSIKHDIAIPIGRVADFVRRCAKDLEQNFKGIQIVCFGHLGDGSLHYNTFLPEILSNEVYRYENDINDAVYRN
VLACNGTIAAEHGIGIIKKQWLDKVRTPAEIALMKSIKQHLDPYNIMNPGKLLP

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI119964728, Length=461, Percent_Identity=33.4056399132321, Blast_Score=261, Evalue=1e-69,
Organism=Homo sapiens, GI37595756, Length=445, Percent_Identity=31.2359550561798, Blast_Score=202, Evalue=4e-52,
Organism=Homo sapiens, GI37595754, Length=468, Percent_Identity=30.3418803418803, Blast_Score=195, Evalue=7e-50,
Organism=Homo sapiens, GI4501993, Length=476, Percent_Identity=24.3697478991597, Blast_Score=116, Evalue=4e-26,
Organism=Escherichia coli, GI1789351, Length=432, Percent_Identity=28.7037037037037, Blast_Score=165, Evalue=5e-42,
Organism=Escherichia coli, GI1787977, Length=510, Percent_Identity=24.9019607843137, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI48994907, Length=241, Percent_Identity=27.3858921161826, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI48994914, Length=155, Percent_Identity=28.3870967741935, Blast_Score=69, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17534361, Length=442, Percent_Identity=31.6742081447964, Blast_Score=218, Evalue=4e-57,
Organism=Caenorhabditis elegans, GI71992373, Length=438, Percent_Identity=28.7671232876712, Blast_Score=190, Evalue=2e-48,
Organism=Caenorhabditis elegans, GI71992381, Length=437, Percent_Identity=27.6887871853547, Blast_Score=177, Evalue=8e-45,
Organism=Caenorhabditis elegans, GI71992392, Length=365, Percent_Identity=29.041095890411, Blast_Score=155, Evalue=3e-38,
Organism=Caenorhabditis elegans, GI17556096, Length=204, Percent_Identity=25.4901960784314, Blast_Score=82, Evalue=7e-16,
Organism=Saccharomyces cerevisiae, GI6320023, Length=459, Percent_Identity=33.9869281045752, Blast_Score=279, Evalue=7e-76,
Organism=Saccharomyces cerevisiae, GI6320764, Length=472, Percent_Identity=32.4152542372881, Blast_Score=264, Evalue=2e-71,
Organism=Saccharomyces cerevisiae, GI6320027, Length=447, Percent_Identity=29.082774049217, Blast_Score=162, Evalue=9e-41,
Organism=Drosophila melanogaster, GI18921117, Length=438, Percent_Identity=32.4200913242009, Blast_Score=228, Evalue=5e-60,
Organism=Drosophila melanogaster, GI24639277, Length=438, Percent_Identity=32.4200913242009, Blast_Score=228, Evalue=5e-60,
Organism=Drosophila melanogaster, GI24639275, Length=438, Percent_Identity=32.4200913242009, Blast_Score=228, Evalue=5e-60,
Organism=Drosophila melanogaster, GI24653753, Length=219, Percent_Identity=27.8538812785388, Blast_Score=93, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 50363; Mature: 50232

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDLHTEFSRLLPADEIAELSPTLLKDQRNRFTSAPDIILQPRSVESVQTIMRFCYEHRI
CCCHHHHHHHCCCHHHHHHCCHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHCCC
PVTPQGGNTGLCGAAVSENGVLLNLSKLNRIRSINLSDNCITVEAGSVLQTVQQAAEASN
CCCCCCCCCCCEECEECCCCEEEEHHHHHHHEECCCCCCEEEEECHHHHHHHHHHHHHHC
RLFPLSLASEGSCQIGGNIACNAGGLNVLRYGTMRDLIIGLEVVLPNGELVSHLHPLHKN
CEEEEEECCCCCEEECCEEEECCCCCCEEECCHHHHHHEEEEEEECCCHHHHHHHHHHCC
TTGYDLRHLFIGSEGTLGIITAATLKLFARPSDKATAWVGIPDIESAVRLLTETQAHFAE
CCCCEEEEEEECCCCCEEHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHH
RLCSFELIGRFAAELSSEFSKLPLPTHSEWHILLELTDSLPDSNLDDRLVEFLYKKGFTD
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCH
SVLAQSEQERIHMWALRENISASQRKLGTSIKHDIAIPIGRVADFVRRCAKDLEQNFKGI
HHHHCCHHHHHHHHHHHHCCCHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCE
QIVCFGHLGDGSLHYNTFLPEILSNEVYRYENDINDAVYRNVLACNGTIAAEHGIGIIKK
EEEEEEECCCCCEEHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHCCCEEEECCCCHHHHH
QWLDKVRTPAEIALMKSIKQHLDPYNIMNPGKLLP
HHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
PDLHTEFSRLLPADEIAELSPTLLKDQRNRFTSAPDIILQPRSVESVQTIMRFCYEHRI
CCHHHHHHHCCCHHHHHHCCHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHCCC
PVTPQGGNTGLCGAAVSENGVLLNLSKLNRIRSINLSDNCITVEAGSVLQTVQQAAEASN
CCCCCCCCCCCEECEECCCCEEEEHHHHHHHEECCCCCCEEEEECHHHHHHHHHHHHHHC
RLFPLSLASEGSCQIGGNIACNAGGLNVLRYGTMRDLIIGLEVVLPNGELVSHLHPLHKN
CEEEEEECCCCCEEECCEEEECCCCCCEEECCHHHHHHEEEEEEECCCHHHHHHHHHHCC
TTGYDLRHLFIGSEGTLGIITAATLKLFARPSDKATAWVGIPDIESAVRLLTETQAHFAE
CCCCEEEEEEECCCCCEEHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHH
RLCSFELIGRFAAELSSEFSKLPLPTHSEWHILLELTDSLPDSNLDDRLVEFLYKKGFTD
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCH
SVLAQSEQERIHMWALRENISASQRKLGTSIKHDIAIPIGRVADFVRRCAKDLEQNFKGI
HHHHCCHHHHHHHHHHHHCCCHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCE
QIVCFGHLGDGSLHYNTFLPEILSNEVYRYENDINDAVYRNVLACNGTIAAEHGIGIIKK
EEEEEEECCCCCEEHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHCCCEEEECCCCHHHHH
QWLDKVRTPAEIALMKSIKQHLDPYNIMNPGKLLP
HHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]