Click here to switch to the map view.

The map label for this gene is bcd [H]

Identifier: 161869905

GI number: 161869905

Start: 940969

End: 942060

Strand: Reverse

Name: bcd [H]

Synonym: NMCC_0937

Alternate gene names: 161869905

Gene position: 942060-940969 (Counterclockwise)

Preceding gene: 161869906

Following gene: 161869904

Centisome position: 43.75

GC content: 58.06

Gene sequence:

>1092_bases
ATGAACGCCCAAACCCTGATTGCCAACGTTGCCGAACTCGTCAAAACCAAGCTCAAACCCTTAGTGGACGACATCGACCG
CAAAGGATACTACCCCGAAGCATTTATGCGCGAACTCGGCGCAATCGGTGGATTCGGCGCAGTCGGTACAGAAGCCGAAG
GCGGCAACGGCTTGGGTTTGGCAACGCAAATCGCCGTATTGCGCGAAATCGGCAAAGAATGCGGCGCAACCTCTTTCAGT
GCGTGGTGTCAGGCGGCTTGCGCGTGGTATCTGCACCAAACGCCCAACCGGGCCGTCAAAGACAAATACCTTGCCGACAT
CCTGCAAGGCAAAGTATTGGCGGGTACGGGCATGTCCAATACCGTCAAACACCTTGCCGACATCGAAAAACACAACCTCC
AAGCCGAACGCGTGGAAGGCGGCTACACAGTCAACGGCGCGCTGCCGTGGGTGTCCAACATCGGCGAAGACCACATTTGG
GCGAATACCGCCCAAATCGGCGGCGGCTACGTCATGTTCATCACAGGCGGACAATGGGAAGGCGTAAGCCTGCAAAACTG
CCCCGAATTTTGCGCCCTCGAAGGTACGCGCACCTTCAGCCTGAATTTCAAAGACGTATTTATCCCCGACGAAGACATCA
TCGCCGCGCCCGAACAGTTTGCCGACTACATCCAAAGCATCAAAGCAGGCTTTATCCTCCTGCAAATCGGCATCGGCGCG
GGCGTAATCGACGGCAGCCTCGGCATCATCCGCCTCGCCAACGTCGTCAACGCCGAAGTCAACAACTACCTCAACGACGG
CTACGACAGCCTCAAAACAAGGCTGGACGGCGCGTGGGCAGAAACCGAACGGCTCGCCGGCTTGGCTTGGAGCGGCACGC
CCGACAACCTTGCTACCCTCAAGCTGCGCGAAGCCGCCGCCGTACTGGCACTTGCCGCCGCCCAATCCGCCGCCCTGCAT
TCCGGCGCAAAAGGCTACCTGATGCGCAGTCCCGCCCAAAGGCGCGTCCGCGAAGCAATGTTTGTTGCCATCGTAACCCC
CGCTATCAAACACCTACGCAAAGAAATAGCGGCAATCGAAGCCGCAAAATAA

Upstream 100 bases:

>100_bases
CAAAAACACCCCTCAAACAAAAACAAGCCGCCCAAGCGGCAGGAAAAGCAGCCGCGCATCAGGCGCACCCCGATTCCCCC
GCAAACCTTAAGGAACAAAG

Downstream 100 bases:

>100_bases
ACAGGCGGAAAAAACCGAAACCCCCACCGCGTCATTCCCGCGAAAGCGGGAATCCAGCCCCCAACGCAACAGGAATCCAT
CGGAAAAAACAGAAACCCTC

Product: acyl-CoA dehydrogenase family protein

Products: NA

Alternate protein names: Butyryl-CoA dehydrogenase; SCAD [H]

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MNAQTLIANVAELVKTKLKPLVDDIDRKGYYPEAFMRELGAIGGFGAVGTEAEGGNGLGLATQIAVLREIGKECGATSFS
AWCQAACAWYLHQTPNRAVKDKYLADILQGKVLAGTGMSNTVKHLADIEKHNLQAERVEGGYTVNGALPWVSNIGEDHIW
ANTAQIGGGYVMFITGGQWEGVSLQNCPEFCALEGTRTFSLNFKDVFIPDEDIIAAPEQFADYIQSIKAGFILLQIGIGA
GVIDGSLGIIRLANVVNAEVNNYLNDGYDSLKTRLDGAWAETERLAGLAWSGTPDNLATLKLREAAAVLALAAAQSAALH
SGAKGYLMRSPAQRRVREAMFVAIVTPAIKHLRKEIAAIEAAK

Sequences:

>Translated_363_residues
MNAQTLIANVAELVKTKLKPLVDDIDRKGYYPEAFMRELGAIGGFGAVGTEAEGGNGLGLATQIAVLREIGKECGATSFS
AWCQAACAWYLHQTPNRAVKDKYLADILQGKVLAGTGMSNTVKHLADIEKHNLQAERVEGGYTVNGALPWVSNIGEDHIW
ANTAQIGGGYVMFITGGQWEGVSLQNCPEFCALEGTRTFSLNFKDVFIPDEDIIAAPEQFADYIQSIKAGFILLQIGIGA
GVIDGSLGIIRLANVVNAEVNNYLNDGYDSLKTRLDGAWAETERLAGLAWSGTPDNLATLKLREAAAVLALAAAQSAALH
SGAKGYLMRSPAQRRVREAMFVAIVTPAIKHLRKEIAAIEAAK
>Mature_363_residues
MNAQTLIANVAELVKTKLKPLVDDIDRKGYYPEAFMRELGAIGGFGAVGTEAEGGNGLGLATQIAVLREIGKECGATSFS
AWCQAACAWYLHQTPNRAVKDKYLADILQGKVLAGTGMSNTVKHLADIEKHNLQAERVEGGYTVNGALPWVSNIGEDHIW
ANTAQIGGGYVMFITGGQWEGVSLQNCPEFCALEGTRTFSLNFKDVFIPDEDIIAAPEQFADYIQSIKAGFILLQIGIGA
GVIDGSLGIIRLANVVNAEVNNYLNDGYDSLKTRLDGAWAETERLAGLAWSGTPDNLATLKLREAAAVLALAAAQSAALH
SGAKGYLMRSPAQRRVREAMFVAIVTPAIKHLRKEIAAIEAAK

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958412, Length=222, Percent_Identity=27.027027027027, Blast_Score=72, Evalue=8e-13,
Organism=Drosophila melanogaster, GI21355753, Length=223, Percent_Identity=25.1121076233184, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: =1.3.99.2 [H]

Molecular weight: Translated: 38835; Mature: 38835

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAQTLIANVAELVKTKLKPLVDDIDRKGYYPEAFMRELGAIGGFGAVGTEAEGGNGLGL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
ATQIAVLREIGKECGATSFSAWCQAACAWYLHQTPNRAVKDKYLADILQGKVLAGTGMSN
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCHH
TVKHLADIEKHNLQAERVEGGYTVNGALPWVSNIGEDHIWANTAQIGGGYVMFITGGQWE
HHHHHHHHHHHCCCHHCCCCCEEECCCCCHHHCCCCCCEEECCEECCCCEEEEEECCCCC
GVSLQNCPEFCALEGTRTFSLNFKDVFIPDEDIIAAPEQFADYIQSIKAGFILLQIGIGA
CCCHHCCCHHHCCCCCEEEEECCEEEECCCCCHHCCHHHHHHHHHHHHHCEEEEEECCCC
GVIDGSLGIIRLANVVNAEVNNYLNDGYDSLKTRLDGAWAETERLAGLAWSGTPDNLATL
CEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHCCEEECCCCCCCEEE
KLREAAAVLALAAAQSAALHSGAKGYLMRSPAQRRVREAMFVAIVTPAIKHLRKEIAAIE
HHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAK
CCC
>Mature Secondary Structure
MNAQTLIANVAELVKTKLKPLVDDIDRKGYYPEAFMRELGAIGGFGAVGTEAEGGNGLGL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
ATQIAVLREIGKECGATSFSAWCQAACAWYLHQTPNRAVKDKYLADILQGKVLAGTGMSN
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCHH
TVKHLADIEKHNLQAERVEGGYTVNGALPWVSNIGEDHIWANTAQIGGGYVMFITGGQWE
HHHHHHHHHHHCCCHHCCCCCEEECCCCCHHHCCCCCCEEECCEECCCCEEEEEECCCCC
GVSLQNCPEFCALEGTRTFSLNFKDVFIPDEDIIAAPEQFADYIQSIKAGFILLQIGIGA
CCCHHCCCHHHCCCCCEEEEECCEEEECCCCCHHCCHHHHHHHHHHHHHCEEEEEECCCC
GVIDGSLGIIRLANVVNAEVNNYLNDGYDSLKTRLDGAWAETERLAGLAWSGTPDNLATL
CEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHCCEEECCCCCCCEEE
KLREAAAVLALAAAQSAALHSGAKGYLMRSPAQRRVREAMFVAIVTPAIKHLRKEIAAIE
HHHHHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAK
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8655474; 11466286 [H]