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The map label for this gene is yafM [H]

Identifier: 161869292

GI number: 161869292

Start: 305019

End: 305576

Strand: Direct

Name: yafM [H]

Synonym: NMCC_0297

Alternate gene names: 161869292

Gene position: 305019-305576 (Clockwise)

Preceding gene: 161869289

Following gene: 161869306

Centisome position: 14.16

GC content: 46.42

Gene sequence:

>558_bases
TTGCAGCAATGCCCAAAATGTCGAATTCAAGAATCCGACCTACAAAATCATTCCGAGCATAATACTATGAAATACCGTCG
TTTTTACCGCAATGGCGGCACTTACTTTTTTACGGTTGTAACCAATAAACGGCAGAAGATTTTGACCGATGATGCGGTGC
GTTTGGCTTTACGGCAGGCGGTAATGGCGGTGCGCGAACGGTATCCGTTTGAAATTTTGGCATGGGTGTTGATGCCCGAC
CATCTGCATACCATATGGCGGCTGCCGGACAATGATTCTGCTTATTCGGAACGCTGGCGGCAAATCAAGCGGCACAGCCA
ATATTTAATCGGCGGCAATCTCAGGCTTTGGCAAAAACGCTTTTGGGAACATACTATCCGCGATGAGGCCGATTTTGCCT
GCCATTTTGATTATCTGCATTTCAATCCGGTCAAACATGGCTATGTAGGACAAATTTCCGATTGGCGGTTTTCTACGTTT
CACCGTTATGTCAAACAGGGTATTTATCCGCATAATTGGGGTGGCGGCAATGCGGACTTTTCTATTGGATACGATTGA

Upstream 100 bases:

>100_bases
GCGTTCTAGATTCCCACTTCCGTGGGAATGACGGTTCAGCAAGCGTAGGTCGGATACTTGTATCCGACAAAACCTTTAAC
ATTCCCATCATTGCAATCCA

Downstream 100 bases:

>100_bases
AGTAATGTCGGATTCGAGAATCCGACCTACGGAAAACTGAAAGAGCATCGGCTGCAGGACGGCATTATGCGCAAAGCCTG
CCGCAACCGTCCGCTGACGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MQQCPKCRIQESDLQNHSEHNTMKYRRFYRNGGTYFFTVVTNKRQKILTDDAVRLALRQAVMAVRERYPFEILAWVLMPD
HLHTIWRLPDNDSAYSERWRQIKRHSQYLIGGNLRLWQKRFWEHTIRDEADFACHFDYLHFNPVKHGYVGQISDWRFSTF
HRYVKQGIYPHNWGGGNADFSIGYD

Sequences:

>Translated_185_residues
MQQCPKCRIQESDLQNHSEHNTMKYRRFYRNGGTYFFTVVTNKRQKILTDDAVRLALRQAVMAVRERYPFEILAWVLMPD
HLHTIWRLPDNDSAYSERWRQIKRHSQYLIGGNLRLWQKRFWEHTIRDEADFACHFDYLHFNPVKHGYVGQISDWRFSTF
HRYVKQGIYPHNWGGGNADFSIGYD
>Mature_185_residues
MQQCPKCRIQESDLQNHSEHNTMKYRRFYRNGGTYFFTVVTNKRQKILTDDAVRLALRQAVMAVRERYPFEILAWVLMPD
HLHTIWRLPDNDSAYSERWRQIKRHSQYLIGGNLRLWQKRFWEHTIRDEADFACHFDYLHFNPVKHGYVGQISDWRFSTF
HRYVKQGIYPHNWGGGNADFSIGYD

Specific function: Unknown

COG id: COG1943

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0217 [H]

Homologues:

Organism=Escherichia coli, GI1786422, Length=161, Percent_Identity=50.3105590062112, Blast_Score=168, Evalue=2e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22374; Mature: 22374

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQCPKCRIQESDLQNHSEHNTMKYRRFYRNGGTYFFTVVTNKRQKILTDDAVRLALRQA
CCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
VMAVRERYPFEILAWVLMPDHLHTIWRLPDNDSAYSERWRQIKRHSQYLIGGNLRLWQKR
HHHHHHCCCHHHHHHHHCCHHHHHHEECCCCCCHHHHHHHHHHHHCCEEECCCHHHHHHH
FWEHTIRDEADFACHFDYLHFNPVKHGYVGQISDWRFSTFHRYVKQGIYPHNWGGGNADF
HHHHHHCCCCCCEEEECCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCE
SIGYD
ECCCC
>Mature Secondary Structure
MQQCPKCRIQESDLQNHSEHNTMKYRRFYRNGGTYFFTVVTNKRQKILTDDAVRLALRQA
CCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
VMAVRERYPFEILAWVLMPDHLHTIWRLPDNDSAYSERWRQIKRHSQYLIGGNLRLWQKR
HHHHHHCCCHHHHHHHHCCHHHHHHEECCCCCCHHHHHHHHHHHHCCEEECCCHHHHHHH
FWEHTIRDEADFACHFDYLHFNPVKHGYVGQISDWRFSTFHRYVKQGIYPHNWGGGNADF
HHHHHHCCCCCCEEEECCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCE
SIGYD
ECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7596361; 9278503 [H]