Click here to switch to the map view.

The map label for this gene is ihfB [H]

Identifier: 161525426

GI number: 161525426

Start: 2469686

End: 2470009

Strand: Reverse

Name: ihfB [H]

Synonym: Bmul_2256

Alternate gene names: 161525426

Gene position: 2470009-2469686 (Counterclockwise)

Preceding gene: 161525427

Following gene: 161525425

Centisome position: 71.63

GC content: 62.35

Gene sequence:

>324_bases
ATGACCAAATCCGAGTTGGTCGCGCAGCTGGCATCGCGATTTCCGCAACTTGTCCTCAAGGATGCGGATTTCGCGGTGAA
GACGATGCTCGATGCGATGTCCGACGCTTTGTCGAAAGGGCATCGCATCGAAATTCGGGGTTTCGGCAGCTTCGGCCTCA
ACCGTCGTCCGGCGCGCGTCGGACGCAACCCGAAGTCGGGGGAGAAAGTGCAGGTGCCCGAGAAGTTCGTGCCGCACTTC
AAGCCCGGCAAGGAGTTGCGTGAACGCGTCGACGGTCGCGCGGGCGAGCCGCTGAAGGCAGACGAGCCGGACGACGAGCG
TTGA

Upstream 100 bases:

>100_bases
GACACCAGCGCTGCCGCGACCGGTACGACCAACCTCGGCGCGCTGCTGAAGGCGAAGCTCGACGGCCAGAACCAGTAAGC
CTCACGAGGTCTGCTGAAGT

Downstream 100 bases:

>100_bases
GCGTCGTGCGGCCGGCCCGGAACCCGTCCGGCAAAGGCTGAAGAAAAAAGCGCCCCTTCGTGGGCGCTTTTTTCGTTTCC
GGCCGCCGTCGCGCAATAGC

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 107; Mature: 106

Protein sequence:

>107_residues
MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARVGRNPKSGEKVQVPEKFVPHF
KPGKELRERVDGRAGEPLKADEPDDER

Sequences:

>Translated_107_residues
MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARVGRNPKSGEKVQVPEKFVPHF
KPGKELRERVDGRAGEPLKADEPDDER
>Mature_106_residues
TKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARVGRNPKSGEKVQVPEKFVPHFK
PGKELRERVDGRAGEPLKADEPDDER

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=56.043956043956, Blast_Score=107, Evalue=1e-25,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=1e-12,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=30.7692307692308, Blast_Score=61, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 11957; Mature: 11826

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHC
GRNPKSGEKVQVPEKFVPHFKPGKELRERVDGRAGEPLKADEPDDER
CCCCCCCCEEECCHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHC
GRNPKSGEKVQVPEKFVPHFKPGKELRERVDGRAGEPLKADEPDDER
CCCCCCCCEEECCHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA