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The map label for this gene is rimM

Identifier: 161525403

GI number: 161525403

Start: 2447472

End: 2448143

Strand: Reverse

Name: rimM

Synonym: Bmul_2233

Alternate gene names: 161525403

Gene position: 2448143-2447472 (Counterclockwise)

Preceding gene: 161525404

Following gene: 161525402

Centisome position: 70.99

GC content: 67.71

Gene sequence:

>672_bases
ATGTCGGATCACGATTCCGGTAATGCAAGGCGCGGGCGGGCGTCGTTCGGCGCATTCGTCCGCAAGCCGGTCGAGCGCGG
TGCGCCCGCAGGCGCGGCTGCCGAACAGGGCGGCCTCGACGCGGTGCAGGCGCTTCCCGACGATGCGGTCGAGGTCGGCG
CGGTAGTCGACGCGTACGGCCTGAAGGGGTGGGTCAAGGTAGCGACTCATGCCGACGCCGGCCGCGGTGGCGATGCGCTG
CTCAGCGCGCGTCGCTGGTGGCTGGAAAAGGGTACGCAGCGGTTTTCGGCGCGTATCGTGCAGTCCAAGACGCACGGCGA
CACGGTCGTCGCGCAACCCGCGGGCGTAGGCGACCGCGATGCCGCGCTGGCTCTGCGCGGCTTTCGTGTGTTCGTGCGCC
GGGAAGATTTCCCGGCATTGGCCGCGGACGAATTCTATTGGGTCGACCTGATCGGCCTCGACGTCGTCAACGAGCAGTCG
GCGACGCTCGGCAAGGTGGTCGGGATGATCGACAACGGCGCGCATTCGATCATGCGTGTCGAGTATCCGTCGGTCGGCAA
GGATGGCCGCCCGGCGGCTGCCGAGCGGCTGATCCCGTTCGTCGGCGTGTATGTCAAAACGGTAGACCAGGCGGCGCGTC
GCATCGTCGTCGACTGGGAAGCCGATTACTGA

Upstream 100 bases:

>100_bases
GTCGCCGACCGTCCAGCGTCTCGTGAAGGAAGCGCAAAAGGCGCAGCCGGCTGCCTGACATGGCGCGGTGTGCCGGTCGT
GCCGGCTGTGAGGTGTATTG

Downstream 100 bases:

>100_bases
AATGAACCAGGTCACGGAGCGCGCGGTGCAGTTCGATGTCGTCACGCTCTTTCCCGAAATGTTCCGCGCGCTGACCGACT
GGGGTATCACCAGCCGGGCC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MSDHDSGNARRGRASFGAFVRKPVERGAPAGAAAEQGGLDAVQALPDDAVEVGAVVDAYGLKGWVKVATHADAGRGGDAL
LSARRWWLEKGTQRFSARIVQSKTHGDTVVAQPAGVGDRDAALALRGFRVFVRREDFPALAADEFYWVDLIGLDVVNEQS
ATLGKVVGMIDNGAHSIMRVEYPSVGKDGRPAAAERLIPFVGVYVKTVDQAARRIVVDWEADY

Sequences:

>Translated_223_residues
MSDHDSGNARRGRASFGAFVRKPVERGAPAGAAAEQGGLDAVQALPDDAVEVGAVVDAYGLKGWVKVATHADAGRGGDAL
LSARRWWLEKGTQRFSARIVQSKTHGDTVVAQPAGVGDRDAALALRGFRVFVRREDFPALAADEFYWVDLIGLDVVNEQS
ATLGKVVGMIDNGAHSIMRVEYPSVGKDGRPAAAERLIPFVGVYVKTVDQAARRIVVDWEADY
>Mature_222_residues
SDHDSGNARRGRASFGAFVRKPVERGAPAGAAAEQGGLDAVQALPDDAVEVGAVVDAYGLKGWVKVATHADAGRGGDALL
SARRWWLEKGTQRFSARIVQSKTHGDTVVAQPAGVGDRDAALALRGFRVFVRREDFPALAADEFYWVDLIGLDVVNEQSA
TLGKVVGMIDNGAHSIMRVEYPSVGKDGRPAAAERLIPFVGVYVKTVDQAARRIVVDWEADY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=179, Percent_Identity=30.1675977653631, Blast_Score=96, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_BURM1 (A9ADT0)

Other databases:

- EMBL:   CP000868
- EMBL:   AP009385
- RefSeq:   YP_001580415.1
- RefSeq:   YP_001945488.1
- ProteinModelPortal:   A9ADT0
- SMR:   A9ADT0
- GeneID:   5767409
- GeneID:   6360132
- GenomeReviews:   AP009385_GR
- GenomeReviews:   CP000868_GR
- KEGG:   bmj:BMULJ_01006
- KEGG:   bmu:Bmul_2233
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- ProtClustDB:   PRK00122
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 23873; Mature: 23742

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDHDSGNARRGRASFGAFVRKPVERGAPAGAAAEQGGLDAVQALPDDAVEVGAVVDAYG
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHC
LKGWVKVATHADAGRGGDALLSARRWWLEKGTQRFSARIVQSKTHGDTVVAQPAGVGDRD
CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCH
AALALRGFRVFVRREDFPALAADEFYWVDLIGLDVVNEQSATLGKVVGMIDNGAHSIMRV
HHHHHHHEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHCCCCCCEEEE
EYPSVGKDGRPAAAERLIPFVGVYVKTVDQAARRIVVDWEADY
ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCC
>Mature Secondary Structure 
SDHDSGNARRGRASFGAFVRKPVERGAPAGAAAEQGGLDAVQALPDDAVEVGAVVDAYG
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHC
LKGWVKVATHADAGRGGDALLSARRWWLEKGTQRFSARIVQSKTHGDTVVAQPAGVGDRD
CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCH
AALALRGFRVFVRREDFPALAADEFYWVDLIGLDVVNEQSATLGKVVGMIDNGAHSIMRV
HHHHHHHEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHCCCCCCEEEE
EYPSVGKDGRPAAAERLIPFVGVYVKTVDQAARRIVVDWEADY
ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA