Click here to switch to the map view.

The map label for this gene is glxA [H]

Identifier: 161525296

GI number: 161525296

Start: 2340113

End: 2341153

Strand: Reverse

Name: glxA [H]

Synonym: Bmul_2126

Alternate gene names: 161525296

Gene position: 2341153-2340113 (Counterclockwise)

Preceding gene: 161525297

Following gene: 161525294

Centisome position: 67.89

GC content: 65.42

Gene sequence:

>1041_bases
GTGGTACCGGTGTCTCGTCCCGCAGGCGCCACCCGCACGACGCAGGTGGCGATCGTTGCATTGCCGCCCGTGTCGATGTC
GGGCGTGGGTCCGATCGTCGATGCGCTGCATCTGGCGAACGAGATCGACGGGCGGCTGCTGTACCGGTGGCAGGTGTGTT
CGTGGGACGGGCGGCCGGTGCCGCTTGCCGGCGGTGCGCAATGGCATGCCGATGCGGCGTTCAACGATGCGATTGCGTGC
GACTGGCTGATCGTGATTTCGGAGCGCTTTCAGCAGTTTGCCGATTACCGGCTGTTTCTCGCGAGTCTCGCGCGGGTCGG
GCAGCGCACGCCGCTCGTGAGCGGGATTCACCACGGCGTGTGGTGGCTTGCGATGGCGGGGCAGTTGTCCGGCTATCGCG
TGAGCGTGAACTGGGAGACGTATCAGCAGTTTGCCGAGCAGTTCGAGCGATCGATCGTCACGCAGCAGATCTTCGAGATC
GATCGCGATCGGGCGACGTGTGCCGGCGGGCAGGCGACTGTCGATTTCATGCTGGCGATGATCGGCCGCGAGCATGGGCC
GGAGCTGTCGGAGCGGATTGCCGATGCGCTCGGGGCCGGTACGCTGCGCAGCGGCGAGGAGCGGCAGCGGATTCCGTTCG
TGACTGCACCGGGCGAGCGGCATCCTCGGCTCAACGACGCGTTGCTGCTGATGGAAGCGAATATCGAGGATCCGCTGACG
ACCGATGAAATCGCGGGATTGGTCGGCGTGTCGCGGCGGCAGCTCGAGCGGCTCTTTCGGCAGTATCTCGGGGCGATGCC
TTCGAAGTACTACCTCAATCTGCGGTTGCTCAAGGCGCGGACTCAATTGCAGCGGACCAGCAAGTCGGTCGTTCAGGTCA
GTCTCGCATGCGGGTTTTCTTCGGCTGCGCATTTTTCCAATGCGTATCGCGAGCGGTTCGGAGTGACGCCGCGGGAGGAT
CGGCGGGCCTGGCTCGAGAAGCAGACGGGCGGCGGCAGTGAACCACGGGCGGGGGCGCTCGTCGAGCGCGGGAAGGATTG
A

Upstream 100 bases:

>100_bases
AAGAGGGCGATCCGAAGGAGGTGCTGGTGCGGCCGCAGAGCGAGCGCCTGAAGCAATTCCTGTCGGGCAGTCTGAAGTAA
CGCGCGCGCAGGTTCGCTTC

Downstream 100 bases:

>100_bases
AGGTGGGTGGGCGCGTTGGCTTTTGGGTGGTCCGCTGGCGTTGGGCGTGAAGCACCTGTGATCGTTTCGGTCTATTAGCG
TCGCCCCTGCGCGGGCGGCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MVPVSRPAGATRTTQVAIVALPPVSMSGVGPIVDALHLANEIDGRLLYRWQVCSWDGRPVPLAGGAQWHADAAFNDAIAC
DWLIVISERFQQFADYRLFLASLARVGQRTPLVSGIHHGVWWLAMAGQLSGYRVSVNWETYQQFAEQFERSIVTQQIFEI
DRDRATCAGGQATVDFMLAMIGREHGPELSERIADALGAGTLRSGEERQRIPFVTAPGERHPRLNDALLLMEANIEDPLT
TDEIAGLVGVSRRQLERLFRQYLGAMPSKYYLNLRLLKARTQLQRTSKSVVQVSLACGFSSAAHFSNAYRERFGVTPRED
RRAWLEKQTGGGSEPRAGALVERGKD

Sequences:

>Translated_346_residues
MVPVSRPAGATRTTQVAIVALPPVSMSGVGPIVDALHLANEIDGRLLYRWQVCSWDGRPVPLAGGAQWHADAAFNDAIAC
DWLIVISERFQQFADYRLFLASLARVGQRTPLVSGIHHGVWWLAMAGQLSGYRVSVNWETYQQFAEQFERSIVTQQIFEI
DRDRATCAGGQATVDFMLAMIGREHGPELSERIADALGAGTLRSGEERQRIPFVTAPGERHPRLNDALLLMEANIEDPLT
TDEIAGLVGVSRRQLERLFRQYLGAMPSKYYLNLRLLKARTQLQRTSKSVVQVSLACGFSSAAHFSNAYRERFGVTPRED
RRAWLEKQTGGGSEPRAGALVERGKD
>Mature_346_residues
MVPVSRPAGATRTTQVAIVALPPVSMSGVGPIVDALHLANEIDGRLLYRWQVCSWDGRPVPLAGGAQWHADAAFNDAIAC
DWLIVISERFQQFADYRLFLASLARVGQRTPLVSGIHHGVWWLAMAGQLSGYRVSVNWETYQQFAEQFERSIVTQQIFEI
DRDRATCAGGQATVDFMLAMIGREHGPELSERIADALGAGTLRSGEERQRIPFVTAPGERHPRLNDALLLMEANIEDPLT
TDEIAGLVGVSRRQLERLFRQYLGAMPSKYYLNLRLLKARTQLQRTSKSVVQVSLACGFSSAAHFSNAYRERFGVTPRED
RRAWLEKQTGGGSEPRAGALVERGKD

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=100, Percent_Identity=37, Blast_Score=72, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38390; Mature: 38390

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPVSRPAGATRTTQVAIVALPPVSMSGVGPIVDALHLANEIDGRLLYRWQVCSWDGRPV
CCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCC
PLAGGAQWHADAAFNDAIACDWLIVISERFQQFADYRLFLASLARVGQRTPLVSGIHHGV
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
WWLAMAGQLSGYRVSVNWETYQQFAEQFERSIVTQQIFEIDRDRATCAGGQATVDFMLAM
HHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHH
IGREHGPELSERIADALGAGTLRSGEERQRIPFVTAPGERHPRLNDALLLMEANIEDPLT
HCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCCCC
TDEIAGLVGVSRRQLERLFRQYLGAMPSKYYLNLRLLKARTQLQRTSKSVVQVSLACGFS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHEEHHHHCCC
SAAHFSNAYRERFGVTPREDRRAWLEKQTGGGSEPRAGALVERGKD
HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHCCCC
>Mature Secondary Structure
MVPVSRPAGATRTTQVAIVALPPVSMSGVGPIVDALHLANEIDGRLLYRWQVCSWDGRPV
CCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCC
PLAGGAQWHADAAFNDAIACDWLIVISERFQQFADYRLFLASLARVGQRTPLVSGIHHGV
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
WWLAMAGQLSGYRVSVNWETYQQFAEQFERSIVTQQIFEIDRDRATCAGGQATVDFMLAM
HHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHH
IGREHGPELSERIADALGAGTLRSGEERQRIPFVTAPGERHPRLNDALLLMEANIEDPLT
HCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCCCC
TDEIAGLVGVSRRQLERLFRQYLGAMPSKYYLNLRLLKARTQLQRTSKSVVQVSLACGFS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHEEHHHHCCC
SAAHFSNAYRERFGVTPREDRRAWLEKQTGGGSEPRAGALVERGKD
HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]