| Definition | Burkholderia multivorans ATCC 17616 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010084 |
| Length | 3,448,466 |
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The map label for this gene is recD [H]
Identifier: 161525257
GI number: 161525257
Start: 2283580
End: 2285904
Strand: Reverse
Name: recD [H]
Synonym: Bmul_2087
Alternate gene names: 161525257
Gene position: 2285904-2283580 (Counterclockwise)
Preceding gene: 161525258
Following gene: 161525256
Centisome position: 66.29
GC content: 73.33
Gene sequence:
>2325_bases ATGAACGTGTCCGACGATACGCTCGAATTCACCGGCGGCCTTGTCGCGCGGCTGCCCGAGCCGGCGGACTTCGGCATCGC GCTCGCGGAGGGCTTCGCGCGCCGGATCGGCGATCTCGCGCGGCGCGCGGGCGCACCGGCCGAGGCCGCGCGCTGGGCCG CACGCGCGGCCTTCGCGACGAGCCGCGCGACCGCGGCCGGTCACGTCTGCGTGTCGCTCGGCGCGCTCGCGCAGCGCTAC GAGGCGACGCTCGACGACGTGCGCGCGGCGCTCGCGGCAAGCGGCGTCGTCGCGTTCGGCACGCTCGTGCGCGGCGACGA GCGGCCGCTGATCGTCGACCGGCACGATCATCTGTATCTGTCGCGCTATTTCGACTACGAACGGCGTCTTGCCGATGCGC TCGTCGCGCAGGCCGGCGTCGCGCGCGCGGACGATGCGCTGTCGCCCGAGCGCCTGCGCGAGAACCTGACACGCTATTTC GGTCCGGCGACCGGCGAAGTCGACTGGCAGCGTGTCGCGGCGATCGTCGCGCTGACGGGCCGCGTGACGATCGTCAGCGG CGGGCCGGGCACCGGGAAGACGACGACCGTCGTCGGCGTGCTGGCCTGTCTGCTCGACGCGCATCCGACGCTGCGCGTTG CGCTCGCCGCGCCGACCGGCAAGGCCGCGCAGCGCATGCAGGAAGCGCTGCACGCGCGTGCCGGCGACTTGCCGCCCGAG CTGGCGGCGCGGCTGCCCGACACGTCGTACACGCTGCACCGGCTGCTCGGCGGCGGCGGTGCGTCGGGCTTTCGCCATCA TCGCGACAACCCGTTGCCGTACGACCTGATCGTCGTCGACGAAGCGTCGATGATCGACGTCGCGCTGGCCGCGCATCTGC TCGATGCGCTCGCGCCCGGCGCGCGGCTCGTGCTGCTCGGCGACAAGGATCAGCTTGCGGCGGTCGAGGCGGGCGCGGTG TTCGCGGAATTGAGCGCACGGCCGACGTTTACCGCCGCCGCACGCACGCGCATTTCGCAGGCGCTGGGGATCGACGAAGC GGCGTTCGCAGCGGCATTGCCGGTGCCGGACGATGAGGCGAGTGAGAACGGAGCGACGTCGGCAGCGTCGGCAGCGCCAC CCGTGGCGCCGCCGCCGACGTCGCCCGCTGTCGCCGCGCGCAAGACGACACGCAAGCGAACGGTCGATGTGCGGCAAGCG TCGCTGTTCGACGACGAGCCGCAGGACGATGGCGCGACGGCGGCCGACAGCGACTCCTCGCCACGACCGTCCACCGACGC TACCAATGCCACCAACGCCACGGACCCGCACGACGACGCCCCCGCGTGGATCGAGGGCGACGAACTCGCATGGCTCGATG CAGCCGTGCTGCCGCCGCTCGACGCGAACGCGGTGGCGCTTGCTTCGACGCCGGCAGCAGCGGCGTCCGCACGCATCGAA GCGACCGCACCGCCGCCCGCCGCGTCCGCGCATGCGTCCGCGCCCGCGCCACTCGCCGACTGCGTCGTCTGGCTCGAACG CAATTACCGGTTCGGGCTCGATTCGCCGATCGGCCGGCTGTCGCTGGCGATCCGCCGCGGCGACGTGCAGGCCGCGCTCG ATGCGTTGCCCGCCGACGACGCGGCCGCCGCGTCCTTTTACGAAGATGCGGGTGACACGCTCGCCGCGGCGACGATCGAC CGGCTCGCGCGGCGGTTCGACGCCTATCTCGACGCGCTGCGCACGGCGCTGGCCGCGCCCGCTCCCGATCCGCTGCCGCT GTTCGACGCACTCAACCGGTTCCGGGTCCTCTGCGCGACGCGCAACGGCTCGCGCGGCGCGGAACACGTGAACGCGCTCG TCGCCGCGCAGGTGCGGCGCGCCGCGCGCGTGCCGCTCGCGGTCGGTGCGCATTGGTTCACGGGGCGGCCGATCATGGTC ACGCGCAACGACTACGCGCTCGGCCTCTTCAACGGCGATATCGGGATCGCGCTGCCCGATGCGAACGGCGTGCTGCGCGT GTGGTTCCGCCGCGCGGACGACACCGCGCGCGCGGTGTCGCCTGCCGCGCTGCCGCCGCACGAGACGGCGTTTGCGCTGA CGGTCCACAAGTCGCAGGGCTCCGAGTTCGACGAGGCCGCGCTCGTGCTGCCGGCATCGTTCGGTCGCGTGCTGACGCGC GAGCTCGTCTATACCGCGGTCACGCGTGCGCGCGCGCGCGTGCAGGTGATCGGCTCGCGGCACGTGCTCGCGCAGGCAGT CGCGGCCCGCACGCAGCGCGATTCGGGCCTGTCGGCGCGCGTCGACGAAGCGCTCGCGCGACGTCGCGCTGAGGCAACGC GATGA
Upstream 100 bases:
>100_bases CCGCCTGGCGCAGCGGCGGCGCGCCGGCCGGCGTGCATGCGCGGCGCCCGGCACGCGAGCTCGTCGACGCGCTCGACCGG ATGATGGAAGGGGGAGCGGC
Downstream 100 bases:
>100_bases TGATCCGCTATACGCTCGATCCGGCCGACGTCGAATGGACGGCCGTGCGCGCACAAGGCGCGGGCGGGCAGAACGTGAAC AAGGTCTCGAGCGCGATTCA
Product: exodeoxyribonuclease V subunit alpha
Products: NA
Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]
Number of amino acids: Translated: 774; Mature: 774
Protein sequence:
>774_residues MNVSDDTLEFTGGLVARLPEPADFGIALAEGFARRIGDLARRAGAPAEAARWAARAAFATSRATAAGHVCVSLGALAQRY EATLDDVRAALAASGVVAFGTLVRGDERPLIVDRHDHLYLSRYFDYERRLADALVAQAGVARADDALSPERLRENLTRYF GPATGEVDWQRVAAIVALTGRVTIVSGGPGTGKTTTVVGVLACLLDAHPTLRVALAAPTGKAAQRMQEALHARAGDLPPE LAARLPDTSYTLHRLLGGGGASGFRHHRDNPLPYDLIVVDEASMIDVALAAHLLDALAPGARLVLLGDKDQLAAVEAGAV FAELSARPTFTAAARTRISQALGIDEAAFAAALPVPDDEASENGATSAASAAPPVAPPPTSPAVAARKTTRKRTVDVRQA SLFDDEPQDDGATAADSDSSPRPSTDATNATNATDPHDDAPAWIEGDELAWLDAAVLPPLDANAVALASTPAAAASARIE ATAPPPAASAHASAPAPLADCVVWLERNYRFGLDSPIGRLSLAIRRGDVQAALDALPADDAAAASFYEDAGDTLAAATID RLARRFDAYLDALRTALAAPAPDPLPLFDALNRFRVLCATRNGSRGAEHVNALVAAQVRRAARVPLAVGAHWFTGRPIMV TRNDYALGLFNGDIGIALPDANGVLRVWFRRADDTARAVSPAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLTR ELVYTAVTRARARVQVIGSRHVLAQAVAARTQRDSGLSARVDEALARRRAEATR
Sequences:
>Translated_774_residues MNVSDDTLEFTGGLVARLPEPADFGIALAEGFARRIGDLARRAGAPAEAARWAARAAFATSRATAAGHVCVSLGALAQRY EATLDDVRAALAASGVVAFGTLVRGDERPLIVDRHDHLYLSRYFDYERRLADALVAQAGVARADDALSPERLRENLTRYF GPATGEVDWQRVAAIVALTGRVTIVSGGPGTGKTTTVVGVLACLLDAHPTLRVALAAPTGKAAQRMQEALHARAGDLPPE LAARLPDTSYTLHRLLGGGGASGFRHHRDNPLPYDLIVVDEASMIDVALAAHLLDALAPGARLVLLGDKDQLAAVEAGAV FAELSARPTFTAAARTRISQALGIDEAAFAAALPVPDDEASENGATSAASAAPPVAPPPTSPAVAARKTTRKRTVDVRQA SLFDDEPQDDGATAADSDSSPRPSTDATNATNATDPHDDAPAWIEGDELAWLDAAVLPPLDANAVALASTPAAAASARIE ATAPPPAASAHASAPAPLADCVVWLERNYRFGLDSPIGRLSLAIRRGDVQAALDALPADDAAAASFYEDAGDTLAAATID RLARRFDAYLDALRTALAAPAPDPLPLFDALNRFRVLCATRNGSRGAEHVNALVAAQVRRAARVPLAVGAHWFTGRPIMV TRNDYALGLFNGDIGIALPDANGVLRVWFRRADDTARAVSPAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLTR ELVYTAVTRARARVQVIGSRHVLAQAVAARTQRDSGLSARVDEALARRRAEATR >Mature_774_residues MNVSDDTLEFTGGLVARLPEPADFGIALAEGFARRIGDLARRAGAPAEAARWAARAAFATSRATAAGHVCVSLGALAQRY EATLDDVRAALAASGVVAFGTLVRGDERPLIVDRHDHLYLSRYFDYERRLADALVAQAGVARADDALSPERLRENLTRYF GPATGEVDWQRVAAIVALTGRVTIVSGGPGTGKTTTVVGVLACLLDAHPTLRVALAAPTGKAAQRMQEALHARAGDLPPE LAARLPDTSYTLHRLLGGGGASGFRHHRDNPLPYDLIVVDEASMIDVALAAHLLDALAPGARLVLLGDKDQLAAVEAGAV FAELSARPTFTAAARTRISQALGIDEAAFAAALPVPDDEASENGATSAASAAPPVAPPPTSPAVAARKTTRKRTVDVRQA SLFDDEPQDDGATAADSDSSPRPSTDATNATNATDPHDDAPAWIEGDELAWLDAAVLPPLDANAVALASTPAAAASARIE ATAPPPAASAHASAPAPLADCVVWLERNYRFGLDSPIGRLSLAIRRGDVQAALDALPADDAAAASFYEDAGDTLAAATID RLARRFDAYLDALRTALAAPAPDPLPLFDALNRFRVLCATRNGSRGAEHVNALVAAQVRRAARVPLAVGAHWFTGRPIMV TRNDYALGLFNGDIGIALPDANGVLRVWFRRADDTARAVSPAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLTR ELVYTAVTRARARVQVIGSRHVLAQAVAARTQRDSGLSARVDEALARRRAEATR
Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi
COG id: COG0507
COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the recD family [H]
Homologues:
Organism=Escherichia coli, GI1789182, Length=314, Percent_Identity=41.7197452229299, Blast_Score=209, Evalue=7e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR007807 - InterPro: IPR006344 - InterPro: IPR000606 [H]
Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]
EC number: =3.1.11.5 [H]
Molecular weight: Translated: 81072; Mature: 81072
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVSDDTLEFTGGLVARLPEPADFGIALAEGFARRIGDLARRAGAPAEAARWAARAAFAT CCCCCCCHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH SRATAAGHVCVSLGALAQRYEATLDDVRAALAASGVVAFGTLVRGDERPLIVDRHDHLYL HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEECCCCEEH SRYFDYERRLADALVAQAGVARADDALSPERLRENLTRYFGPATGEVDWQRVAAIVALTG HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHEEEC RVTIVSGGPGTGKTTTVVGVLACLLDAHPTLRVALAAPTGKAAQRMQEALHARAGDLPPE EEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCHH LAARLPDTSYTLHRLLGGGGASGFRHHRDNPLPYDLIVVDEASMIDVALAAHLLDALAPG HHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCC ARLVLLGDKDQLAAVEAGAVFAELSARPTFTAAARTRISQALGIDEAAFAAALPVPDDEA CEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHEECCCCCCCC SENGATSAASAAPPVAPPPTSPAVAARKTTRKRTVDVRQASLFDDEPQDDGATAADSDSS CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC PRPSTDATNATNATDPHDDAPAWIEGDELAWLDAAVLPPLDANAVALASTPAAAASARIE CCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEHHHHCCCCCCCCEEEECCCCHHHCCEEE ATAPPPAASAHASAPAPLADCVVWLERNYRFGLDSPIGRLSLAIRRGDVQAALDALPADD ECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHCCCCCH AAAASFYEDAGDTLAAATIDRLARRFDAYLDALRTALAAPAPDPLPLFDALNRFRVLCAT HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEEEEE RNGSRGAEHVNALVAAQVRRAARVPLAVGAHWFTGRPIMVTRNDYALGLFNGDIGIALPD CCCCCCHHHHHHHHHHHHHHHHCCCCEECCEEECCCEEEEECCCEEEEEEECCEEEEECC ANGVLRVWFRRADDTARAVSPAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLTR CCCEEEEEEHHCCCHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHH ELVYTAVTRARARVQVIGSRHVLAQAVAARTQRDSGLSARVDEALARRRAEATR HHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNVSDDTLEFTGGLVARLPEPADFGIALAEGFARRIGDLARRAGAPAEAARWAARAAFAT CCCCCCCHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH SRATAAGHVCVSLGALAQRYEATLDDVRAALAASGVVAFGTLVRGDERPLIVDRHDHLYL HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEECCCCEEH SRYFDYERRLADALVAQAGVARADDALSPERLRENLTRYFGPATGEVDWQRVAAIVALTG HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHEEEC RVTIVSGGPGTGKTTTVVGVLACLLDAHPTLRVALAAPTGKAAQRMQEALHARAGDLPPE EEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCHH LAARLPDTSYTLHRLLGGGGASGFRHHRDNPLPYDLIVVDEASMIDVALAAHLLDALAPG HHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCC ARLVLLGDKDQLAAVEAGAVFAELSARPTFTAAARTRISQALGIDEAAFAAALPVPDDEA CEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHEECCCCCCCC SENGATSAASAAPPVAPPPTSPAVAARKTTRKRTVDVRQASLFDDEPQDDGATAADSDSS CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC PRPSTDATNATNATDPHDDAPAWIEGDELAWLDAAVLPPLDANAVALASTPAAAASARIE CCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEHHHHCCCCCCCCEEEECCCCHHHCCEEE ATAPPPAASAHASAPAPLADCVVWLERNYRFGLDSPIGRLSLAIRRGDVQAALDALPADD ECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHCCCCCH AAAASFYEDAGDTLAAATIDRLARRFDAYLDALRTALAAPAPDPLPLFDALNRFRVLCAT HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEEEEE RNGSRGAEHVNALVAAQVRRAARVPLAVGAHWFTGRPIMVTRNDYALGLFNGDIGIALPD CCCCCCHHHHHHHHHHHHHHHHCCCCEECCEEECCCEEEEECCCEEEEEEECCEEEEECC ANGVLRVWFRRADDTARAVSPAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLTR CCCEEEEEEHHCCCHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHH ELVYTAVTRARARVQVIGSRHVLAQAVAARTQRDSGLSARVDEALARRRAEATR HHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3537961; 9278503; 3537960 [H]