Definition | Burkholderia multivorans ATCC 17616 chromosome chromosome 1, complete sequence. |
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Accession | NC_010084 |
Length | 3,448,466 |
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The map label for this gene is dinF [H]
Identifier: 161525164
GI number: 161525164
Start: 2190592
End: 2191953
Strand: Direct
Name: dinF [H]
Synonym: Bmul_1994
Alternate gene names: 161525164
Gene position: 2190592-2191953 (Clockwise)
Preceding gene: 161525163
Following gene: 161525166
Centisome position: 63.52
GC content: 71.37
Gene sequence:
>1362_bases ATGTCCGATTCCGCTTTACCGCGCGGCACGGCCGTATCGCACCGGCGCGTGCTCGCGCTCGCGTTTCCGATCGTTCTCGC GAATCTGACGCAGCCGATCCTCGGCGCGGTCGACACGGCCGTCGCCGGCCACCTCGACGGCGCGCAGTATCTCGGCGGCG TCGCGCTCGGCGGCCTGTTCTTCAACTTCGTGTTCTGGGGCTTCGGCTTCCTGCGGATGGGCACCACCGGGCTCGTCGCG CAGTCGCACGGCGCCGGCGACACCGACGGCATCCGGCTGAACCTGCTGCGCGCGCTGATCGTTGCGTTCGCGCTCGGCGC CGCGGTGCTCGCGCTGCAGGTGCCGTTGCTGTCGTTCGCGCTGCGCGCGCTCGGCGGCAGCGACGCCGTGCAGACGACGG CGCTCGCCTACAGCCATGCGCGGATCTGGAGCGCGCCGTTCGCGCTCGCCAACTACGTCGTGCTCGGCTATCTGCTCGGC GTGCAGCGCGTGCGGCTCGCTCTCGTCGCGCAGGGGTTCATCAACGCGGTGAACATCGGCGCGGTGCTGCTCTACGTGTA CGGATTCGGCTGGGGCATCGCGGGCATCGGTGCCGCGACGGCGACCGCCGACACCTGCGGGTTCGCGCTCGGCGCCTGGC TGCTCTGGCAGCTGCGGCCGCGCGGGCTGCCGCCGCTCGCCGCGCGCGCCCTCGCCGATCGCGCGGCGCTCAAGCGCCTC GTCGCGCTGAACCGCGACATCTTTCTGCGCACGTTGTGCCTGCTCGGCGCATTCGGCTGGTTCGCGCATCTCGGCGCGAA ACAGGGCGACGCAACGCTCGCGGCCAATGCGCTGCTGCTGAACTTCCAGACCTTCATGGCGTACGGCCTCGACGGTTTCG CGCACGCGGCCGAAGCGCTCGTCGGCGCGGCAGCCGGCGCGCGCGATCGCGCCGCGTTCCGGCAGGCGGTGCGTATCACG CTGTTCTGGTCCGCGCTCGGCGCCCTGCTGTTCGCGCTCGTCTACTGGGCGGCCGGCGGCTGGATCGTCGCGCGTCTGAC CGATCAGGCCGAGATCCGCGCCGTCGCGCTGCGCTATCTGCCCTGGGCTGCGCTGTCGCCGATCGTATCGGTGTGGGGAT TCCTGCTCGACGGCGTCTTCATCGGCGCCACGCAGACGCAATCGCTGATGCGCGCGATGATCGTGTCGTTCGCGACTTTC GTCGCGGCGACGTTCGCGGCCGTCGGCACGTTCGGCAACCACGGTCTCTGGTTCGCGCTGCTCGTGTTCATGGCTGCGCG CGGCGTGACGCTCGCCCGCTACCTGCCCGCGCTGACGCGCAAGATCGGCGGCGACGCGCAGGTCGCAGCGGCCGCGTCCT GA
Upstream 100 bases:
>100_bases GCCGAAACCGCCAGCGACTACGCGGCGCGCAACCCGGAACTGTGGGCGGTCGTCGTATCGCCGTGGGTGTGCGTGCAGGA ACGCGCCTGACGCGTCCGCC
Downstream 100 bases:
>100_bases TCCGTCACTGCGCGGCGGGCGGCGGCGGTTCGCCGAGCATCGACGGCGGCGTCATGTCCGTCGGCACGCCGTGGTAGTCG GCCGGATCGGTGGGCGGATG
Product: MATE efflux family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 453; Mature: 452
Protein sequence:
>453_residues MSDSALPRGTAVSHRRVLALAFPIVLANLTQPILGAVDTAVAGHLDGAQYLGGVALGGLFFNFVFWGFGFLRMGTTGLVA QSHGAGDTDGIRLNLLRALIVAFALGAAVLALQVPLLSFALRALGGSDAVQTTALAYSHARIWSAPFALANYVVLGYLLG VQRVRLALVAQGFINAVNIGAVLLYVYGFGWGIAGIGAATATADTCGFALGAWLLWQLRPRGLPPLAARALADRAALKRL VALNRDIFLRTLCLLGAFGWFAHLGAKQGDATLAANALLLNFQTFMAYGLDGFAHAAEALVGAAAGARDRAAFRQAVRIT LFWSALGALLFALVYWAAGGWIVARLTDQAEIRAVALRYLPWAALSPIVSVWGFLLDGVFIGATQTQSLMRAMIVSFATF VAATFAAVGTFGNHGLWFALLVFMAARGVTLARYLPALTRKIGGDAQVAAAAS
Sequences:
>Translated_453_residues MSDSALPRGTAVSHRRVLALAFPIVLANLTQPILGAVDTAVAGHLDGAQYLGGVALGGLFFNFVFWGFGFLRMGTTGLVA QSHGAGDTDGIRLNLLRALIVAFALGAAVLALQVPLLSFALRALGGSDAVQTTALAYSHARIWSAPFALANYVVLGYLLG VQRVRLALVAQGFINAVNIGAVLLYVYGFGWGIAGIGAATATADTCGFALGAWLLWQLRPRGLPPLAARALADRAALKRL VALNRDIFLRTLCLLGAFGWFAHLGAKQGDATLAANALLLNFQTFMAYGLDGFAHAAEALVGAAAGARDRAAFRQAVRIT LFWSALGALLFALVYWAAGGWIVARLTDQAEIRAVALRYLPWAALSPIVSVWGFLLDGVFIGATQTQSLMRAMIVSFATF VAATFAAVGTFGNHGLWFALLVFMAARGVTLARYLPALTRKIGGDAQVAAAAS >Mature_452_residues SDSALPRGTAVSHRRVLALAFPIVLANLTQPILGAVDTAVAGHLDGAQYLGGVALGGLFFNFVFWGFGFLRMGTTGLVAQ SHGAGDTDGIRLNLLRALIVAFALGAAVLALQVPLLSFALRALGGSDAVQTTALAYSHARIWSAPFALANYVVLGYLLGV QRVRLALVAQGFINAVNIGAVLLYVYGFGWGIAGIGAATATADTCGFALGAWLLWQLRPRGLPPLAARALADRAALKRLV ALNRDIFLRTLCLLGAFGWFAHLGAKQGDATLAANALLLNFQTFMAYGLDGFAHAAEALVGAAAGARDRAAFRQAVRITL FWSALGALLFALVYWAAGGWIVARLTDQAEIRAVALRYLPWAALSPIVSVWGFLLDGVFIGATQTQSLMRAMIVSFATFV AATFAAVGTFGNHGLWFALLVFMAARGVTLARYLPALTRKIGGDAQVAAAAS
Specific function: Unknown
COG id: COG0534
COG function: function code V; Na+-driven multidrug efflux pump
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family [H]
Homologues:
Organism=Escherichia coli, GI1790477, Length=421, Percent_Identity=42.2802850356295, Blast_Score=240, Evalue=1e-64, Organism=Escherichia coli, GI48994890, Length=283, Percent_Identity=28.9752650176678, Blast_Score=63, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002528 [H]
Pfam domain/function: PF01554 MatE [H]
EC number: NA
Molecular weight: Translated: 47491; Mature: 47360
Theoretical pI: Translated: 10.90; Mature: 10.90
Prosite motif: PS00116 DNA_POLYMERASE_B
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDSALPRGTAVSHRRVLALAFPIVLANLTQPILGAVDTAVAGHLDGAQYLGGVALGGLF CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH FNFVFWGFGFLRMGTTGLVAQSHGAGDTDGIRLNLLRALIVAFALGAAVLALQVPLLSFA HHHHHHHHHHHHHCCHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRALGGSDAVQTTALAYSHARIWSAPFALANYVVLGYLLGVQRVRLALVAQGFINAVNIG HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVLLYVYGFGWGIAGIGAATATADTCGFALGAWLLWQLRPRGLPPLAARALADRAALKRL HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH VALNRDIFLRTLCLLGAFGWFAHLGAKQGDATLAANALLLNFQTFMAYGLDGFAHAAEAL HHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH VGAAAGARDRAAFRQAVRITLFWSALGALLFALVYWAAGGWIVARLTDQAEIRAVALRYL HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHC PWAALSPIVSVWGFLLDGVFIGATQTQSLMRAMIVSFATFVAATFAAVGTFGNHGLWFAL CHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH LVFMAARGVTLARYLPALTRKIGGDAQVAAAAS HHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure SDSALPRGTAVSHRRVLALAFPIVLANLTQPILGAVDTAVAGHLDGAQYLGGVALGGLF CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH FNFVFWGFGFLRMGTTGLVAQSHGAGDTDGIRLNLLRALIVAFALGAAVLALQVPLLSFA HHHHHHHHHHHHHCCHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRALGGSDAVQTTALAYSHARIWSAPFALANYVVLGYLLGVQRVRLALVAQGFINAVNIG HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVLLYVYGFGWGIAGIGAATATADTCGFALGAWLLWQLRPRGLPPLAARALADRAALKRL HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH VALNRDIFLRTLCLLGAFGWFAHLGAKQGDATLAANALLLNFQTFMAYGLDGFAHAAEAL HHHCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH VGAAAGARDRAAFRQAVRITLFWSALGALLFALVYWAAGGWIVARLTDQAEIRAVALRYL HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHC PWAALSPIVSVWGFLLDGVFIGATQTQSLMRAMIVSFATFVAATFAAVGTFGNHGLWFAL CHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH LVFMAARGVTLARYLPALTRKIGGDAQVAAAAS HHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8265357; 9278503 [H]