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The map label for this gene is fecI [H]

Identifier: 161525107

GI number: 161525107

Start: 2123009

End: 2123518

Strand: Reverse

Name: fecI [H]

Synonym: Bmul_1935

Alternate gene names: 161525107

Gene position: 2123518-2123009 (Counterclockwise)

Preceding gene: 161525108

Following gene: 161525106

Centisome position: 61.58

GC content: 70.39

Gene sequence:

>510_bases
ATGTCTGCTGACAAGCTGTCCCTCCATCGAGAAATCGACGCGCTGTATGCCGGCCATCACGCATGGCTGCGCGGCTGGCT
GAGCCGCAAGCTCGGTTGCGCGCACCGCGCGGCCGATCTCGCGCACGACACGTTCATGCGTCTGCTCGCGCGCGACGAGC
CGATCGCCGCCGAGGCGCCGCGCGCGTTCCTGACGACGGTCGCGCAGCGCGTGCTGTACAACCACTGGCGGCGCGAGCAG
CTCGAACGCGCGTATCTCGACGCGCTCGCGCAGCGCGCGGACGTGTATGCGCCGTCGCCGGAAGAGCGGGCGGTCGTGCT
CGACACGCTGCTCGAGATCGACCGTCTCCTCGACGGTCTGCCGGCCGCCGCGAAGCGCGCGTTCCTGCTCGCCCAGCTCG
ACGGGCTCACGCAGGCGGAGATCGCGCGCGAGCTCGGCGTGTCGCTCGCGACGGTCAAGCGCTATCTGGTCAAGGCCGGC
GCGCAGTGCTTCTTCGCGATGGCGGCATGA

Upstream 100 bases:

>100_bases
CGCAAGCATGGCGCCGCCCGCGGCGGTCGGGTAGTCGGTTTTGTATATAATAATCATTCTCATTTGCAGAAACGCTCCCG
ACCGCCTCCGGAATCCGGCC

Downstream 100 bases:

>100_bases
CGATGGCCGCGTCCCGCAGCCCGGCGATCACGCCGGAGGTCGCGCGTCGCGCCGTCGAGTGGTGGGTCGACCTGCATGCG
GGCGGCGACACGCGCGCGAG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MSADKLSLHREIDALYAGHHAWLRGWLSRKLGCAHRAADLAHDTFMRLLARDEPIAAEAPRAFLTTVAQRVLYNHWRREQ
LERAYLDALAQRADVYAPSPEERAVVLDTLLEIDRLLDGLPAAAKRAFLLAQLDGLTQAEIARELGVSLATVKRYLVKAG
AQCFFAMAA

Sequences:

>Translated_169_residues
MSADKLSLHREIDALYAGHHAWLRGWLSRKLGCAHRAADLAHDTFMRLLARDEPIAAEAPRAFLTTVAQRVLYNHWRREQ
LERAYLDALAQRADVYAPSPEERAVVLDTLLEIDRLLDGLPAAAKRAFLLAQLDGLTQAEIARELGVSLATVKRYLVKAG
AQCFFAMAA
>Mature_168_residues
SADKLSLHREIDALYAGHHAWLRGWLSRKLGCAHRAADLAHDTFMRLLARDEPIAAEAPRAFLTTVAQRVLYNHWRREQL
ERAYLDALAQRADVYAPSPEERAVVLDTLLEIDRLLDGLPAAAKRAFLLAQLDGLTQAEIARELGVSLATVKRYLVKAGA
QCFFAMAA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=154, Percent_Identity=48.0519480519481, Blast_Score=154, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 18861; Mature: 18730

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSADKLSLHREIDALYAGHHAWLRGWLSRKLGCAHRAADLAHDTFMRLLARDEPIAAEAP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCH
RAFLTTVAQRVLYNHWRREQLERAYLDALAQRADVYAPSPEERAVVLDTLLEIDRLLDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC
PAAAKRAFLLAQLDGLTQAEIARELGVSLATVKRYLVKAGAQCFFAMAA
CHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SADKLSLHREIDALYAGHHAWLRGWLSRKLGCAHRAADLAHDTFMRLLARDEPIAAEAP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCH
RAFLTTVAQRVLYNHWRREQLERAYLDALAQRADVYAPSPEERAVVLDTLLEIDRLLDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC
PAAAKRAFLLAQLDGLTQAEIARELGVSLATVKRYLVKAGAQCFFAMAA
CHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]