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The map label for this gene is nodJ [H]

Identifier: 161524815

GI number: 161524815

Start: 1817850

End: 1818689

Strand: Direct

Name: nodJ [H]

Synonym: Bmul_1642

Alternate gene names: 161524815

Gene position: 1817850-1818689 (Clockwise)

Preceding gene: 161524814

Following gene: 161524820

Centisome position: 52.71

GC content: 67.02

Gene sequence:

>840_bases
ATGGACGTACGCAACTATCCGGATTCCGCTGCGCCGCACGCGACGCCCGCGCGCGAATCGCGCTTCGCGCTCGCGATGCC
GGCGAACGCGACCAACTGGATCGCGGTCTGGCGCCGCAACTATCTGGTCTGGCGCAAGCTCGCGCTCGCGTCGATGTTCG
GCAATCTGGCCGACCCGATGATCTATCTGTTCGGGCTCGGTTTCGGGCTCGGCCTGATGCTCGGCCACGTCGACGGCGTG
TCGTACATCGCGTTTCTCGCAGCCGGCACGGTCGGCTCGAGCGTGATGATGTCGGCGAGCTTCGAATCGATGTATTCGGG
TTTTTCGCGGATGCACGTGCAGCGCACGTGGGAAGCGATCATGCACACGCCGCTCGCGCTCGGCGACGTCGTGCTCGGCG
AAATCGTCTGGGGTGCCAGCAAGGCGATGCTGTCGGGCGCCGCGATCATGCTCGTTGCGGGTCTCCTCGGCTATGCGCGG
TTTCCGTCGATGCTCGCCGCACTGCCGGTGATCGCGCTGGCGGGGCTCGCGTTCGCGAGCGTCGCGATGGTCGTCACGGC
GCTCGCGCCGTCGTACGACTTTTTCATGTTCTATCAGACGCTCGTGCTGACGCCGATGCTGCTGCTCTCGGGTGTTTTCT
TCCCGATCACGCAGTTGCCGCAGCTCGCGCAGCATGCGGCGCAGGCGCTGCCGCTCGCCAATGCCGTCGAGCTGATTCGG
CCGGCGATGCTCGGCCGGCCCGCGACGGACATCGGCCTGCACGTCGCGATCCTCGCCGCCTATGCGGTGGGCGGCTTCCT
GCTGTGCGCGTGGCTGTTCCGGCGCCGGCTGATGCGCTGA

Upstream 100 bases:

>100_bases
GGATCAAGGGCCGCGCCGGGTTGCGCTATCTGCATCGTCCGGCCAATCTGGAGGACGTGTTCCTGCGGCTGACCGGCCGC
GACATGCAGGACTGACCGAC

Downstream 100 bases:

>100_bases
CGCACGGCGCGCGCAGCGCCGCCCCTGCGCGCGACGACGTCACTCGTCGTCGTCGCTCCACGGAATCTCGACGTCGGTCA
GGAAGGCGACGGTCGCGAGC

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MDVRNYPDSAAPHATPARESRFALAMPANATNWIAVWRRNYLVWRKLALASMFGNLADPMIYLFGLGFGLGLMLGHVDGV
SYIAFLAAGTVGSSVMMSASFESMYSGFSRMHVQRTWEAIMHTPLALGDVVLGEIVWGASKAMLSGAAIMLVAGLLGYAR
FPSMLAALPVIALAGLAFASVAMVVTALAPSYDFFMFYQTLVLTPMLLLSGVFFPITQLPQLAQHAAQALPLANAVELIR
PAMLGRPATDIGLHVAILAAYAVGGFLLCAWLFRRRLMR

Sequences:

>Translated_279_residues
MDVRNYPDSAAPHATPARESRFALAMPANATNWIAVWRRNYLVWRKLALASMFGNLADPMIYLFGLGFGLGLMLGHVDGV
SYIAFLAAGTVGSSVMMSASFESMYSGFSRMHVQRTWEAIMHTPLALGDVVLGEIVWGASKAMLSGAAIMLVAGLLGYAR
FPSMLAALPVIALAGLAFASVAMVVTALAPSYDFFMFYQTLVLTPMLLLSGVFFPITQLPQLAQHAAQALPLANAVELIR
PAMLGRPATDIGLHVAILAAYAVGGFLLCAWLFRRRLMR
>Mature_279_residues
MDVRNYPDSAAPHATPARESRFALAMPANATNWIAVWRRNYLVWRKLALASMFGNLADPMIYLFGLGFGLGLMLGHVDGV
SYIAFLAAGTVGSSVMMSASFESMYSGFSRMHVQRTWEAIMHTPLALGDVVLGEIVWGASKAMLSGAAIMLVAGLLGYAR
FPSMLAALPVIALAGLAFASVAMVVTALAPSYDFFMFYQTLVLTPMLLLSGVFFPITQLPQLAQHAAQALPLANAVELIR
PAMLGRPATDIGLHVAILAAYAVGGFLLCAWLFRRRLMR

Specific function: Part of the ABC transporter complex nodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525
- InterPro:   IPR005981 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30076; Mature: 30076

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
6.5 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
6.5 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVRNYPDSAAPHATPARESRFALAMPANATNWIAVWRRNYLVWRKLALASMFGNLADPM
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYLFGLGFGLGLMLGHVDGVSYIAFLAAGTVGSSVMMSASFESMYSGFSRMHVQRTWEAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MHTPLALGDVVLGEIVWGASKAMLSGAAIMLVAGLLGYARFPSMLAALPVIALAGLAFAS
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAMVVTALAPSYDFFMFYQTLVLTPMLLLSGVFFPITQLPQLAQHAAQALPLANAVELIR
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
PAMLGRPATDIGLHVAILAAYAVGGFLLCAWLFRRRLMR
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]