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The map label for this gene is ybeY [C]

Identifier: 161523783

GI number: 161523783

Start: 660942

End: 661655

Strand: Reverse

Name: ybeY [C]

Synonym: Bmul_0603

Alternate gene names: 161523783

Gene position: 661655-660942 (Counterclockwise)

Preceding gene: 161523784

Following gene: 161523782

Centisome position: 19.19

GC content: 67.23

Gene sequence:

>714_bases
GTGTCGCTGTTCGATGCGAAGGGCAAGGCCCGCACCGTGAAGGCGCAGGGGCTGCGAATCGACTTTCCGGACGGCCGCAG
CCTGATGTTCGACCTGTCGGGCAGCTCGGGCGACGCCGCCGTCGCGATCGTCGCGCAGCACAACGATCCGGCGATGCGCG
CGAAGCTCGCGCTGCAGCCCGAGCATTACGACAGCCTCACGCTGCACGTCGGCGCCGAGCCCGCGCCGCGCGACGAAGAC
GACGATGGCGAGCAGCGCGAGCAGGAACTCGACCTGTCCGTGCAATACGGCGACGAAATCACGAGCGAGGTGCGCAAGAC
GCTGCCGAAGCGCAAGCTGATCGCCGAATGGCTCGAGCCGGCGCTGTTCGCGAACGCGCAGATCACGGTGCGCTTCGTCG
GCGAAACGGAAGGCCGCACGCTGAACGCCGGCTATCGCCACAAGGACTACCCGACCAACGTGCTGACATTCGCCTACGAT
CCGGCGCCGGACGGCACCGTGATCGGCGATCTCGTGCTGTGCTGCCCCGTCGTCGAGAAGGAAGCGCGCGAGCAGGACAA
GCCGCTCGCGGCCCACTACGCGCACCTGCTCGTGCACGGCGCGCTGCATGCGCAAGGCTACGATCACGAGACGAGCGACG
AGGACGCCGCCGAGATGGAAGCGCTCGAAGTCGACATCCTCGCGAAACTGGGCTTTCCGAACCCGTACCGGTAA

Upstream 100 bases:

>100_bases
GGTGTATCCTCATCGCGTTCCAATCGCCGTACGCGTCATGAAATCCACCCGTTCTCGCAAGTCGGGACGCGCCGAGTCCG
CCGCGTCCGAATCCACCCGC

Downstream 100 bases:

>100_bases
TCCGGCCGAACGATGCAGAACGCCGCGACGCTCCCGCCCGCCTACCCGCCGTCGATCGGCGAAGGCCGTCTGCTGACGGA
AGAGGAGCTTGCGGCATCGC

Product: fused unkown domain/putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MSLFDAKGKARTVKAQGLRIDFPDGRSLMFDLSGSSGDAAVAIVAQHNDPAMRAKLALQPEHYDSLTLHVGAEPAPRDED
DDGEQREQELDLSVQYGDEITSEVRKTLPKRKLIAEWLEPALFANAQITVRFVGETEGRTLNAGYRHKDYPTNVLTFAYD
PAPDGTVIGDLVLCCPVVEKEAREQDKPLAAHYAHLLVHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYR

Sequences:

>Translated_237_residues
MSLFDAKGKARTVKAQGLRIDFPDGRSLMFDLSGSSGDAAVAIVAQHNDPAMRAKLALQPEHYDSLTLHVGAEPAPRDED
DDGEQREQELDLSVQYGDEITSEVRKTLPKRKLIAEWLEPALFANAQITVRFVGETEGRTLNAGYRHKDYPTNVLTFAYD
PAPDGTVIGDLVLCCPVVEKEAREQDKPLAAHYAHLLVHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYR
>Mature_236_residues
SLFDAKGKARTVKAQGLRIDFPDGRSLMFDLSGSSGDAAVAIVAQHNDPAMRAKLALQPEHYDSLTLHVGAEPAPRDEDD
DGEQREQELDLSVQYGDEITSEVRKTLPKRKLIAEWLEPALFANAQITVRFVGETEGRTLNAGYRHKDYPTNVLTFAYDP
APDGTVIGDLVLCCPVVEKEAREQDKPLAAHYAHLLVHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=143, Percent_Identity=45.4545454545455, Blast_Score=115, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 26121; Mature: 25990

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFDAKGKARTVKAQGLRIDFPDGRSLMFDLSGSSGDAAVAIVAQHNDPAMRAKLALQP
CCCCCCCCCEEEEEECCEEEECCCCCEEEEEECCCCCCEEEEEEEECCCCCCEEEEEECC
EHYDSLTLHVGAEPAPRDEDDDGEQREQELDLSVQYGDEITSEVRKTLPKRKLIAEWLEP
CCCCEEEEEECCCCCCCCCCCCHHHHHHHCCEEEECCHHHHHHHHHHCCHHHHHHHHHHH
ALFANAQITVRFVGETEGRTLNAGYRHKDYPTNVLTFAYDPAPDGTVIGDLVLCCPVVEK
HHCCCCEEEEEEEECCCCCEECCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
EAREQDKPLAAHYAHLLVHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYR
HHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHEEHEECCCCCCCC
>Mature Secondary Structure 
SLFDAKGKARTVKAQGLRIDFPDGRSLMFDLSGSSGDAAVAIVAQHNDPAMRAKLALQP
CCCCCCCCEEEEEECCEEEECCCCCEEEEEECCCCCCEEEEEEEECCCCCCEEEEEECC
EHYDSLTLHVGAEPAPRDEDDDGEQREQELDLSVQYGDEITSEVRKTLPKRKLIAEWLEP
CCCCEEEEEECCCCCCCCCCCCHHHHHHHCCEEEECCHHHHHHHHHHCCHHHHHHHHHHH
ALFANAQITVRFVGETEGRTLNAGYRHKDYPTNVLTFAYDPAPDGTVIGDLVLCCPVVEK
HHCCCCEEEEEEEECCCCCEECCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
EAREQDKPLAAHYAHLLVHGALHAQGYDHETSDEDAAEMEALEVDILAKLGFPNPYR
HHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHEEHEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA