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The map label for this gene is cydA [H]

Identifier: 161523664

GI number: 161523664

Start: 530375

End: 531955

Strand: Reverse

Name: cydA [H]

Synonym: Bmul_0484

Alternate gene names: 161523664

Gene position: 531955-530375 (Counterclockwise)

Preceding gene: 161523665

Following gene: 161523663

Centisome position: 15.43

GC content: 64.14

Gene sequence:

>1581_bases
ATGATAAGTAGCGAAGTCGTCGATCTGTCACGTCTGCAGTTCGGCATCACGGCGCTCTACCACTTCCTGTTCGTCCCGCT
GACGCTCGGCCTGTCCTGGCTGCTCGTCATCATGGAATCGGTCTACGTGATGACCGGCAAGCAGGTCTACAAGGACATGA
CGCAGTTCTGGGGCAAGCTGTTCGGGATCAATTTCGCGATGGGCGTGACGACCGGCATCACGCTCGAATTCCAGTTCGGC
ACGAACTGGTCGTACTACTCGCACTACGTCGGCGACATCTTCGGCGTGCCGCTCGCCGTCGAAGGCCTGATGGCGTTCTT
CCTCGAATCGACGTTCGTCGGCCTGTTCTTCTTCGGCTGGAACCGCCTGTCGAAAGTGCAGCATCTGATCGTCACGTTCC
TCGTCGCGCTCGGCTCGAATCTGTCGGCGCTGTGGATCCTCGTCGCGAACGGCTGGATGAACAACCCGGTCGGCGCCGAG
TTCAACTATCAGACGATGCGCATGGAGCTGACGAGCCTGTTCGACGTGCTGTTCAATCCGGTCGCGCAGGTGAAGTTCGT
GCACACGGTGTCGGCCGGCTACGTGACGGCTGCGATGTTCGTGCTCGGCGTGTCGTCGTGGTATCTGCTGAAAAAGCGCG
ACGTCGACTTCGCGCTGCGCTCGTTCGCGGTCGCGGCCGGCTTCGGTCTCGCCTCCACGCTGTGCGTGATCGTGCTCGGC
GACGAATCGGGCTACACGACCGGCGAAGTGCAGAAGATGAAGCTCGCCGCGATCGAATCGGAATGGGAAACGCAGCCGGC
GCCGGCGTCGTTCACGCTGATCGGCATCCCGAACCAGGAAGCGCAGCGCACCGACTATGCGGTCAAGATTCCGTATGCGC
TCGGCCTGATCGCGACGCGCTCGATCGACGAGCCCGTGATCGGGCTGCGCGAGCTCGCCAAGCGCAGCGAGGCGCACATC
CAGAGCGGCATGATCGCGTACGGCGCGCTGCAGAAGATCAAGGCCGGCGACACGAGCGCGGAGACGCGCGCGCTGTTCGA
CGCGCACAAGCAGTATCTCGGCTACGGGCTGATGCTCAAGCAGTTCACGCCGAACGTGACCGACGCGACGCCTGCGCAGA
TCGAAGCGGCGGCGAAGAAGACGATTCCGCCGGTCGCGCCCGTGTTCTTCTCGTTCCGCATCATGGTGTTCCTCGGCTTC
CTGTTCCTCGCGACCTTCATCGCCGCGTTCTGGTTCTGCGCGCGCCGCGAACTGCTGCAGGACAACCGCCGCTGGTTCCT
GCGCTACGCAGTGTGGGCGATCCCGCTGCCGTGGCTCGCGGCGGAATTCGGCTGGGTCGTCGCCGAGCTCGGCCGCCAGC
CGTGGACGATCGCCGGCGTGCTGCCGACGCATCTGTCGGCGTCGAGCCTCACGCCGACCGACCTGTACCTGAGCCTGGCC
GGGTTCATCGTGTTCTACACCGCGCTGTTCGTGATCGAGATCACGCTGATGTTCAAGTACGCGCGCCTCGGCCCGTCGTC
GCTGCACACCGGCCGCTATCACCACGAGCAGGCGGCCGCACGCGAACACGCGGCCGCATGA

Upstream 100 bases:

>100_bases
TTCAATCATCCGCAGGCCGAGCACATGTCGTTGCCGCCTGCCGCCGTCGCCGAGAAGCTGCTCTCGGTACCGGCGCCCGC
TTCTACCGAGGGAGACCACC

Downstream 100 bases:

>100_bases
GCACGCCCCCGCAACGACACAAGGAATCGCTATGGACTATGCAACGCTCAAGCTGATCTGGTGGCTGCTCGTCGGCGTGC
TGCTGATCGGCTTTGCCGTC

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 526; Mature: 526

Protein sequence:

>526_residues
MISSEVVDLSRLQFGITALYHFLFVPLTLGLSWLLVIMESVYVMTGKQVYKDMTQFWGKLFGINFAMGVTTGITLEFQFG
TNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWNRLSKVQHLIVTFLVALGSNLSALWILVANGWMNNPVGAE
FNYQTMRMELTSLFDVLFNPVAQVKFVHTVSAGYVTAAMFVLGVSSWYLLKKRDVDFALRSFAVAAGFGLASTLCVIVLG
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGIPNQEAQRTDYAVKIPYALGLIATRSIDEPVIGLRELAKRSEAHI
QSGMIAYGALQKIKAGDTSAETRALFDAHKQYLGYGLMLKQFTPNVTDATPAQIEAAAKKTIPPVAPVFFSFRIMVFLGF
LFLATFIAAFWFCARRELLQDNRRWFLRYAVWAIPLPWLAAEFGWVVAELGRQPWTIAGVLPTHLSASSLTPTDLYLSLA
GFIVFYTALFVIEITLMFKYARLGPSSLHTGRYHHEQAAAREHAAA

Sequences:

>Translated_526_residues
MISSEVVDLSRLQFGITALYHFLFVPLTLGLSWLLVIMESVYVMTGKQVYKDMTQFWGKLFGINFAMGVTTGITLEFQFG
TNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWNRLSKVQHLIVTFLVALGSNLSALWILVANGWMNNPVGAE
FNYQTMRMELTSLFDVLFNPVAQVKFVHTVSAGYVTAAMFVLGVSSWYLLKKRDVDFALRSFAVAAGFGLASTLCVIVLG
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGIPNQEAQRTDYAVKIPYALGLIATRSIDEPVIGLRELAKRSEAHI
QSGMIAYGALQKIKAGDTSAETRALFDAHKQYLGYGLMLKQFTPNVTDATPAQIEAAAKKTIPPVAPVFFSFRIMVFLGF
LFLATFIAAFWFCARRELLQDNRRWFLRYAVWAIPLPWLAAEFGWVVAELGRQPWTIAGVLPTHLSASSLTPTDLYLSLA
GFIVFYTALFVIEITLMFKYARLGPSSLHTGRYHHEQAAAREHAAA
>Mature_526_residues
MISSEVVDLSRLQFGITALYHFLFVPLTLGLSWLLVIMESVYVMTGKQVYKDMTQFWGKLFGINFAMGVTTGITLEFQFG
TNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWNRLSKVQHLIVTFLVALGSNLSALWILVANGWMNNPVGAE
FNYQTMRMELTSLFDVLFNPVAQVKFVHTVSAGYVTAAMFVLGVSSWYLLKKRDVDFALRSFAVAAGFGLASTLCVIVLG
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGIPNQEAQRTDYAVKIPYALGLIATRSIDEPVIGLRELAKRSEAHI
QSGMIAYGALQKIKAGDTSAETRALFDAHKQYLGYGLMLKQFTPNVTDATPAQIEAAAKKTIPPVAPVFFSFRIMVFLGF
LFLATFIAAFWFCARRELLQDNRRWFLRYAVWAIPLPWLAAEFGWVVAELGRQPWTIAGVLPTHLSASSLTPTDLYLSLA
GFIVFYTALFVIEITLMFKYARLGPSSLHTGRYHHEQAAAREHAAA

Specific function: May be involved in maintaining the low intracellular oxygen concentration required for nitrogen fixation [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=521, Percent_Identity=64.6833013435701, Blast_Score=719, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=514, Percent_Identity=54.4747081712062, Blast_Score=575, Evalue=1e-165,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 58588; Mature: 58588

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSEVVDLSRLQFGITALYHFLFVPLTLGLSWLLVIMESVYVMTGKQVYKDMTQFWGKL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGINFAMGVTTGITLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGW
HCCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
NRLSKVQHLIVTFLVALGSNLSALWILVANGWMNNPVGAEFNYQTMRMELTSLFDVLFNP
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCH
VAQVKFVHTVSAGYVTAAMFVLGVSSWYLLKKRDVDFALRSFAVAAGFGLASTLCVIVLG
HHHEEEEHHHHHHHHHHHHHHHHCCHHEEEECCCHHHHHHHHHHHHCCCHHHEEEEEEEE
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGIPNQEAQRTDYAVKIPYALGLIATR
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHCCCCEEECCHHHHHHHHC
SIDEPVIGLRELAKRSEAHIQSGMIAYGALQKIKAGDTSAETRALFDAHKQYLGYGLMLK
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
QFTPNVTDATPAQIEAAAKKTIPPVAPVFFSFRIMVFLGFLFLATFIAAFWFCARRELLQ
HCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DNRRWFLRYAVWAIPLPWLAAEFGWVVAELGRQPWTIAGVLPTHLSASSLTPTDLYLSLA
CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEECCHHCCCCCCCCHHHHHHHHH
GFIVFYTALFVIEITLMFKYARLGPSSLHTGRYHHEQAAAREHAAA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MISSEVVDLSRLQFGITALYHFLFVPLTLGLSWLLVIMESVYVMTGKQVYKDMTQFWGKL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGINFAMGVTTGITLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGW
HCCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
NRLSKVQHLIVTFLVALGSNLSALWILVANGWMNNPVGAEFNYQTMRMELTSLFDVLFNP
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCH
VAQVKFVHTVSAGYVTAAMFVLGVSSWYLLKKRDVDFALRSFAVAAGFGLASTLCVIVLG
HHHEEEEHHHHHHHHHHHHHHHHCCHHEEEECCCHHHHHHHHHHHHCCCHHHEEEEEEEE
DESGYTTGEVQKMKLAAIESEWETQPAPASFTLIGIPNQEAQRTDYAVKIPYALGLIATR
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHCCCCEEECCHHHHHHHHC
SIDEPVIGLRELAKRSEAHIQSGMIAYGALQKIKAGDTSAETRALFDAHKQYLGYGLMLK
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
QFTPNVTDATPAQIEAAAKKTIPPVAPVFFSFRIMVFLGFLFLATFIAAFWFCARRELLQ
HCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DNRRWFLRYAVWAIPLPWLAAEFGWVVAELGRQPWTIAGVLPTHLSASSLTPTDLYLSLA
CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEECCHHCCCCCCCCHHHHHHHHH
GFIVFYTALFVIEITLMFKYARLGPSSLHTGRYHHEQAAAREHAAA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1655703; 1660468; 2170336 [H]