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The map label for this gene is cydB [H]

Identifier: 161523663

GI number: 161523663

Start: 529207

End: 530343

Strand: Reverse

Name: cydB [H]

Synonym: Bmul_0483

Alternate gene names: 161523663

Gene position: 530343-529207 (Counterclockwise)

Preceding gene: 161523664

Following gene: 161523651

Centisome position: 15.38

GC content: 66.75

Gene sequence:

>1137_bases
ATGGACTATGCAACGCTCAAGCTGATCTGGTGGCTGCTCGTCGGCGTGCTGCTGATCGGCTTTGCCGTCACCGACGGCTT
CGACATGGGCGCGACCGCGCTGCTGCCGTTCCTCGGCAAGACCGACGACGAACGCCGGATCATCGTCAACACGGTCGGCG
CGACGTGGGAAGGCAACCAGGTGTGGCTGATCACGGCCGGCGGCGCGATGTTCGCCGCGTGGCCGCTCGTCTACGCCGCG
TCGTTCTCCGGCTTCTACTTCGCGATGCTGCTCGTGCTGTTCGCGCTGTTCTTCCGGCCGGTCGGCTTCGACTATCGCAG
CAAGCGCCCGGACCCGCGCTGGCGCGCAGGCTGGGACTGGGGCCTGTTCATCGGCGGCTTCGTGCCGGCGCTCGTGTTCG
GCGTCGCGTTCGGCAATCTGCTGCAGGGCGTGCCGTTTCGCTTCGACACCGATCTGCGCGTCAGCTATCACGGCAGCTTC
TGGGCGCTGCTGAATCCGTTCGCGCTGCTCTGCGGGCTCGTCAGCCTGACGATGCTCGTCGCGCACGGCGCCGCGTTCAT
CAAGCTGAAGACGGACGGCGTGATCGCGCGCCGTGCGTCGGTCGCGCTGCGCGTGTCGTCGTTCGTCGCGGTCGTGCTGT
TCGCGCTCGCGGGCGTGCTGGTCGCCGCCCATGTCGACGGCTTCCACATCACGCGTGCCGCGCCCGCCGACACGGTCGCC
AATCCGCTGCTGAAGGAGGTCGCGTCCGGCGCCGGGCTGTGGCTCGCGAACTACCGCGACTATCCGTGGATGATCGCGGC
GCCCGTCGTCGGCATCGCGGGCGGGCTGCTCGCGACACTGCTCGCGGGCTCGCGCCGCGAAAAGACGGCGTTCTTCTGCA
CGGGCCTGATGATCGTCGGCGTGATTCTCACGGCCGGCTTCTCGATGTTCCCGTTCATCATGCCGTCGTCGCTGGACCCG
ACGAGCAGCCTGACCGTCTGGGATTCGACGTCGAGCGAGAAGACGCTGCTCGTGATGCTGTTTGCCGTGATCGTGTTCCT
GCCGATCATCCTCGTCTATACGAGCTGGGTCTATCGCGTGATGCGCGGCAAGGTCACGCGTCAGGTGCTCGACGAGAACA
CGCACTCGATGTATTGA

Upstream 100 bases:

>100_bases
CCGTCGTCGCTGCACACCGGCCGCTATCACCACGAGCAGGCGGCCGCACGCGAACACGCGGCCGCATGAGCACGCCCCCG
CAACGACACAAGGAATCGCT

Downstream 100 bases:

>100_bases
ACGCGGCCGGCGCGCGCAGGCGCGCCGCGGCCGCTCCCCCGTTTCGCAAGGAGTCGGATCATGTGGTATTTCAGCTGGAT
TCTCGGGATCGGCGTCGCGC

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MDYATLKLIWWLLVGVLLIGFAVTDGFDMGATALLPFLGKTDDERRIIVNTVGATWEGNQVWLITAGGAMFAAWPLVYAA
SFSGFYFAMLLVLFALFFRPVGFDYRSKRPDPRWRAGWDWGLFIGGFVPALVFGVAFGNLLQGVPFRFDTDLRVSYHGSF
WALLNPFALLCGLVSLTMLVAHGAAFIKLKTDGVIARRASVALRVSSFVAVVLFALAGVLVAAHVDGFHITRAAPADTVA
NPLLKEVASGAGLWLANYRDYPWMIAAPVVGIAGGLLATLLAGSRREKTAFFCTGLMIVGVILTAGFSMFPFIMPSSLDP
TSSLTVWDSTSSEKTLLVMLFAVIVFLPIILVYTSWVYRVMRGKVTRQVLDENTHSMY

Sequences:

>Translated_378_residues
MDYATLKLIWWLLVGVLLIGFAVTDGFDMGATALLPFLGKTDDERRIIVNTVGATWEGNQVWLITAGGAMFAAWPLVYAA
SFSGFYFAMLLVLFALFFRPVGFDYRSKRPDPRWRAGWDWGLFIGGFVPALVFGVAFGNLLQGVPFRFDTDLRVSYHGSF
WALLNPFALLCGLVSLTMLVAHGAAFIKLKTDGVIARRASVALRVSSFVAVVLFALAGVLVAAHVDGFHITRAAPADTVA
NPLLKEVASGAGLWLANYRDYPWMIAAPVVGIAGGLLATLLAGSRREKTAFFCTGLMIVGVILTAGFSMFPFIMPSSLDP
TSSLTVWDSTSSEKTLLVMLFAVIVFLPIILVYTSWVYRVMRGKVTRQVLDENTHSMY
>Mature_378_residues
MDYATLKLIWWLLVGVLLIGFAVTDGFDMGATALLPFLGKTDDERRIIVNTVGATWEGNQVWLITAGGAMFAAWPLVYAA
SFSGFYFAMLLVLFALFFRPVGFDYRSKRPDPRWRAGWDWGLFIGGFVPALVFGVAFGNLLQGVPFRFDTDLRVSYHGSF
WALLNPFALLCGLVSLTMLVAHGAAFIKLKTDGVIARRASVALRVSSFVAVVLFALAGVLVAAHVDGFHITRAAPADTVA
NPLLKEVASGAGLWLANYRDYPWMIAAPVVGIAGGLLATLLAGSRREKTAFFCTGLMIVGVILTAGFSMFPFIMPSSLDP
TSSLTVWDSTSSEKTLLVMLFAVIVFLPIILVYTSWVYRVMRGKVTRQVLDENTHSMY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=378, Percent_Identity=54.4973544973545, Blast_Score=416, Evalue=1e-117,
Organism=Escherichia coli, GI1787213, Length=377, Percent_Identity=53.0503978779841, Blast_Score=395, Evalue=1e-111,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41310; Mature: 41310

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYATLKLIWWLLVGVLLIGFAVTDGFDMGATALLPFLGKTDDERRIIVNTVGATWEGNQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCE
VWLITAGGAMFAAWPLVYAASFSGFYFAMLLVLFALFFRPVGFDYRSKRPDPRWRAGWDW
EEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
GLFIGGFVPALVFGVAFGNLLQGVPFRFDTDLRVSYHGSFWALLNPFALLCGLVSLTMLV
HHHHHHHHHHHHHHHHHHHHHCCCCCEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
AHGAAFIKLKTDGVIARRASVALRVSSFVAVVLFALAGVLVAAHVDGFHITRAAPADTVA
HCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHH
NPLLKEVASGAGLWLANYRDYPWMIAAPVVGIAGGLLATLLAGSRREKTAFFCTGLMIVG
HHHHHHHHCCCCEEEECCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
VILTAGFSMFPFIMPSSLDPTSSLTVWDSTSSEKTLLVMLFAVIVFLPIILVYTSWVYRV
HHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MRGKVTRQVLDENTHSMY
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDYATLKLIWWLLVGVLLIGFAVTDGFDMGATALLPFLGKTDDERRIIVNTVGATWEGNQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCE
VWLITAGGAMFAAWPLVYAASFSGFYFAMLLVLFALFFRPVGFDYRSKRPDPRWRAGWDW
EEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
GLFIGGFVPALVFGVAFGNLLQGVPFRFDTDLRVSYHGSFWALLNPFALLCGLVSLTMLV
HHHHHHHHHHHHHHHHHHHHHCCCCCEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
AHGAAFIKLKTDGVIARRASVALRVSSFVAVVLFALAGVLVAAHVDGFHITRAAPADTVA
HCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHH
NPLLKEVASGAGLWLANYRDYPWMIAAPVVGIAGGLLATLLAGSRREKTAFFCTGLMIVG
HHHHHHHHCCCCEEEECCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
VILTAGFSMFPFIMPSSLDPTSSLTVWDSTSSEKTLLVMLFAVIVFLPIILVYTSWVYRV
HHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MRGKVTRQVLDENTHSMY
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]