Click here to switch to the map view.

The map label for this gene is 161509662

Identifier: 161509662

GI number: 161509662

Start: 1563889

End: 1564191

Strand: Reverse

Name: 161509662

Synonym: USA300HOU_1433

Alternate gene names: NA

Gene position: 1564191-1563889 (Counterclockwise)

Preceding gene: 161509663

Following gene: 161509661

Centisome position: 54.45

GC content: 32.01

Gene sequence:

>303_bases
ATGGATGCAAAAGTAATAACAAGATACATCGTATTGATCTTAGCATTAGTAAATCAATTCTTAGCGAATAAAGGTATAAG
TCCGATACCAGTAGATGAAGAAAGTGTTTCATCGATTATCTTAACAGTTGTTGCTTTATATACTACATATAAAGATAATC
CAACATCTCAAGAAGGGAAATGGGCGAATCAAAAATTAAAGAAATATAAAGCTGAAAGTAAATATAGAAAAGCAACAGGG
CAAGCGCCAATTAAAGAAGTAATGACACCTACGAATATGAACGACACAAATGATTTAGGGTAG

Upstream 100 bases:

>100_bases
TATAGCTTTTGGTCGTGTTTCTGGTTTGGTAAGTGTAAGTAATATTTAAGAGTCAGTGCTTCGGCACTGGCTTTTTATTT
TGGATAAAAGGAGCAAACAA

Downstream 100 bases:

>100_bases
GTGTTGACCAATGTTGATAACAAAAAACCAAGCAGAAAAATGGTTTGATAATTCATTAGGGAAGCAGTTCAATCCTGATT
TGTTTTATGGATTTCAGTGT

Product: holin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 100; Mature: 100

Protein sequence:

>100_residues
MDAKVITRYIVLILALVNQFLANKGISPIPVDEESVSSIILTVVALYTTYKDNPTSQEGKWANQKLKKYKAESKYRKATG
QAPIKEVMTPTNMNDTNDLG

Sequences:

>Translated_100_residues
MDAKVITRYIVLILALVNQFLANKGISPIPVDEESVSSIILTVVALYTTYKDNPTSQEGKWANQKLKKYKAESKYRKATG
QAPIKEVMTPTNMNDTNDLG
>Mature_100_residues
MDAKVITRYIVLILALVNQFLANKGISPIPVDEESVSSIILTVVALYTTYKDNPTSQEGKWANQKLKKYKAESKYRKATG
QAPIKEVMTPTNMNDTNDLG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11134; Mature: 11134

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAKVITRYIVLILALVNQFLANKGISPIPVDEESVSSIILTVVALYTTYKDNPTSQEGK
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCH
WANQKLKKYKAESKYRKATGQAPIKEVMTPTNMNDTNDLG
HHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MDAKVITRYIVLILALVNQFLANKGISPIPVDEESVSSIILTVVALYTTYKDNPTSQEGK
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCH
WANQKLKKYKAESKYRKATGQAPIKEVMTPTNMNDTNDLG
HHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA