Click here to switch to the map view.

The map label for this gene is yjbK [H]

Identifier: 161509201

GI number: 161509201

Start: 1007122

End: 1007715

Strand: Reverse

Name: yjbK [H]

Synonym: USA300HOU_0961

Alternate gene names: 161509201

Gene position: 1007715-1007122 (Counterclockwise)

Preceding gene: 161509210

Following gene: 161509200

Centisome position: 35.08

GC content: 29.8

Gene sequence:

>594_bases
ATGGCAACAAATCATGAAATAGAATTTAAACAAATGATAACTGCATCAATCTATAATAAATTGCAAGAGAAATATTTTAA
AGACAGTGTGCTTTTTAAGCAAGTCAATTACTATATTGATACACCCGATTTCAAATTAAAGGAACATCGCTCTGCACTAC
GCATAAGAGTTAAAGACAATCAATATGAAATGACTTTAAAGACACCAGCAAAGGTTGGTCTATTAGAATACAACTATATC
GTCGACATTAAACCAGAGATGAACTTGATTATTTCAAACGACAATCTTCCAGATGACATTCGTCAAATTATAGTTGAACA
GTTTGGTGTAAAAGATACAACTTTATCAATACTTGGTGCATTAACGACATATCGCCAAGAAACTAAATATAAAGGTGATT
TACTGGTTTTAGATAAAAGTGAGTATTTCGATACTACGGATTATGAGTTAGAGTTCGAAGTTAAAGACTATAATCAAGGT
TTACAAAAGTTCCAATCTTTATTAAACGAACTAAACCTCGAACATCATCAACCTTTAAATAAAGTTCAACGTTTTTTCAA
GAAAAAAGAAACACTTTCAAACAATATAAATTAA

Upstream 100 bases:

>100_bases
AACATTGATAATAGATAAAGGAAATTACTTTTAAAATTCAACTTTGTCATTCATAATATAGTTAAGATAAATTGAATTTG
ATACGAGGTGTATACATATC

Downstream 100 bases:

>100_bases
ATTGGCAAATATGCATATTTCTTTCAAATGTTTAAAATCATGTTATATTAGTTATATATTAACTTAAGTTCGTAACAGTA
AATTTTTGAAAATGGGTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MATNHEIEFKQMITASIYNKLQEKYFKDSVLFKQVNYYIDTPDFKLKEHRSALRIRVKDNQYEMTLKTPAKVGLLEYNYI
VDIKPEMNLIISNDNLPDDIRQIIVEQFGVKDTTLSILGALTTYRQETKYKGDLLVLDKSEYFDTTDYELEFEVKDYNQG
LQKFQSLLNELNLEHHQPLNKVQRFFKKKETLSNNIN

Sequences:

>Translated_197_residues
MATNHEIEFKQMITASIYNKLQEKYFKDSVLFKQVNYYIDTPDFKLKEHRSALRIRVKDNQYEMTLKTPAKVGLLEYNYI
VDIKPEMNLIISNDNLPDDIRQIIVEQFGVKDTTLSILGALTTYRQETKYKGDLLVLDKSEYFDTTDYELEFEVKDYNQG
LQKFQSLLNELNLEHHQPLNKVQRFFKKKETLSNNIN
>Mature_196_residues
ATNHEIEFKQMITASIYNKLQEKYFKDSVLFKQVNYYIDTPDFKLKEHRSALRIRVKDNQYEMTLKTPAKVGLLEYNYIV
DIKPEMNLIISNDNLPDDIRQIIVEQFGVKDTTLSILGALTTYRQETKYKGDLLVLDKSEYFDTTDYELEFEVKDYNQGL
QKFQSLLNELNLEHHQPLNKVQRFFKKKETLSNNIN

Specific function: Unknown

COG id: COG4116

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008172
- InterPro:   IPR004206
- InterPro:   IPR009195 [H]

Pfam domain/function: PF01928 CYTH [H]

EC number: NA

Molecular weight: Translated: 23392; Mature: 23261

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATNHEIEFKQMITASIYNKLQEKYFKDSVLFKQVNYYIDTPDFKLKEHRSALRIRVKDN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCHHHHCCCEEEEEEECC
QYEMTLKTPAKVGLLEYNYIVDIKPEMNLIISNDNLPDDIRQIIVEQFGVKDTTLSILGA
EEEEEEECCCCEEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHH
LTTYRQETKYKGDLLVLDKSEYFDTTDYELEFEVKDYNQGLQKFQSLLNELNLEHHQPLN
HHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCHH
KVQRFFKKKETLSNNIN
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ATNHEIEFKQMITASIYNKLQEKYFKDSVLFKQVNYYIDTPDFKLKEHRSALRIRVKDN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCHHHHCCCEEEEEEECC
QYEMTLKTPAKVGLLEYNYIVDIKPEMNLIISNDNLPDDIRQIIVEQFGVKDTTLSILGA
EEEEEEECCCCEEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHH
LTTYRQETKYKGDLLVLDKSEYFDTTDYELEFEVKDYNQGLQKFQSLLNELNLEHHQPLN
HHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCHH
KVQRFFKKKETLSNNIN
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]