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The map label for this gene is rbsR [H]

Identifier: 160902717

GI number: 160902717

Start: 1350705

End: 1351700

Strand: Direct

Name: rbsR [H]

Synonym: Pmob_1261

Alternate gene names: 160902717

Gene position: 1350705-1351700 (Clockwise)

Preceding gene: 160902716

Following gene: 160902718

Centisome position: 62.26

GC content: 29.52

Gene sequence:

>996_bases
ATGCCCAGCGTAAAAGATGTAGCTAAATTAGCAAATGTCAGTGTAGGTACCGTTTCTAAGGTTTTGAATAATGATCCAAC
GGTCAAGCAAAAAAACCGTGAGAAAGTATTAAAAACTATCAAGCAATTAAACTACGTTCCTAATATTTATGCAAAAAGTT
TGTCTTCTAGAAAAACAAAGATGATTTCAATAGTGTCTTCAACGTTAGGTGATGAATTTCATGAAAGATTAGTCTCTTCA
ATTGATCAAATTTTGTCTGAAAATGGTTACGATAGCATATTTTTTTCTCTTCTATCAAGAGAAAGATTGAAAAGATTCTC
AAACCCTTCACATTTCTTGTATCAGACTGATGGACTAATCGTATCTTCTCTTTCTTTAACTAAAATGTTTGAAAATAAAA
CACTTCCTACTTCTAAACCTTATATTTTGGTGGATACAAGAGATGCATTGAATGATTGCGCATTTATTGATAATTATTAT
GGAGGCAAATTAGTTGGTCAAAATATAAAGTTATATGAGAATTCTAAAGTTTATATTTTAGGTGGCTATGAGCCAGATGA
AGCTTTTAGTAGCGGTGTGTTTAGTGAAAGAATTATTGGTTTTATCGACGAACTAGTTAACAATAGAGGTTTCAATAGAA
AGAATATAGTAATTATGAAAGTGGGGCTAAGCTTGAAAGAAAGTTATGAATTTGGAAAAAAATTTACACCAAACCAAAGA
CATAAATTTAGTGTTTTTGCACTTTCTGATATTATAGCTTTTGGCTTCATTGAGGGAATGAAAACTTTAGGAATAAAACC
TCCTGATAACTATTCAATTATTGGTTACGATGATTTGTCATATTCTGAAAATATTGAATTAAGTACAGTAAGGCAACCTA
TTGAAGAACTAGGCAAAGTATCTGCAGAACTTTTATTAAAAAAAATTAATAATAAATTTGAAGATAAAATTCATAAGTCT
CTTATCCCAGAATTTATTGAAAGAAATACGAATTAA

Upstream 100 bases:

>100_bases
TAACCACTTCAAACACAAGGTATTAAAAGTTAGTTAAATTCTGTGTTTTAGAATTTCTGAAGTGGATATGAATCGATTCA
TAATTAAAGGAGGTATGCAA

Downstream 100 bases:

>100_bases
AAAGGTTTAAAACTAACGTATGTTAGTTTATTTTAACAAAAAAAGGAGGAAATAGTATGAAAAGGGATTTAGCTGTTATT
GTATTTGTGTTATTGTTATC

Product: LacI family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MPSVKDVAKLANVSVGTVSKVLNNDPTVKQKNREKVLKTIKQLNYVPNIYAKSLSSRKTKMISIVSSTLGDEFHERLVSS
IDQILSENGYDSIFFSLLSRERLKRFSNPSHFLYQTDGLIVSSLSLTKMFENKTLPTSKPYILVDTRDALNDCAFIDNYY
GGKLVGQNIKLYENSKVYILGGYEPDEAFSSGVFSERIIGFIDELVNNRGFNRKNIVIMKVGLSLKESYEFGKKFTPNQR
HKFSVFALSDIIAFGFIEGMKTLGIKPPDNYSIIGYDDLSYSENIELSTVRQPIEELGKVSAELLLKKINNKFEDKIHKS
LIPEFIERNTN

Sequences:

>Translated_331_residues
MPSVKDVAKLANVSVGTVSKVLNNDPTVKQKNREKVLKTIKQLNYVPNIYAKSLSSRKTKMISIVSSTLGDEFHERLVSS
IDQILSENGYDSIFFSLLSRERLKRFSNPSHFLYQTDGLIVSSLSLTKMFENKTLPTSKPYILVDTRDALNDCAFIDNYY
GGKLVGQNIKLYENSKVYILGGYEPDEAFSSGVFSERIIGFIDELVNNRGFNRKNIVIMKVGLSLKESYEFGKKFTPNQR
HKFSVFALSDIIAFGFIEGMKTLGIKPPDNYSIIGYDDLSYSENIELSTVRQPIEELGKVSAELLLKKINNKFEDKIHKS
LIPEFIERNTN
>Mature_330_residues
PSVKDVAKLANVSVGTVSKVLNNDPTVKQKNREKVLKTIKQLNYVPNIYAKSLSSRKTKMISIVSSTLGDEFHERLVSSI
DQILSENGYDSIFFSLLSRERLKRFSNPSHFLYQTDGLIVSSLSLTKMFENKTLPTSKPYILVDTRDALNDCAFIDNYYG
GKLVGQNIKLYENSKVYILGGYEPDEAFSSGVFSERIIGFIDELVNNRGFNRKNIVIMKVGLSLKESYEFGKKFTPNQRH
KFSVFALSDIIAFGFIEGMKTLGIKPPDNYSIIGYDDLSYSENIELSTVRQPIEELGKVSAELLLKKINNKFEDKIHKSL
IPEFIERNTN

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787948, Length=339, Percent_Identity=25.3687315634218, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1788474, Length=349, Percent_Identity=23.7822349570201, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1790194, Length=351, Percent_Identity=24.2165242165242, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1789202, Length=345, Percent_Identity=24.9275362318841, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI48994940, Length=326, Percent_Identity=23.3128834355828, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1786540, Length=308, Percent_Identity=24.025974025974, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787580, Length=328, Percent_Identity=22.8658536585366, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1790715, Length=323, Percent_Identity=21.671826625387, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 37521; Mature: 37389

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSVKDVAKLANVSVGTVSKVLNNDPTVKQKNREKVLKTIKQLNYVPNIYAKSLSSRKTK
CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
MISIVSSTLGDEFHERLVSSIDQILSENGYDSIFFSLLSRERLKRFSNPSHFLYQTDGLI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCEE
VSSLSLTKMFENKTLPTSKPYILVDTRDALNDCAFIDNYYGGKLVGQNIKLYENSKVYIL
EHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEEECCCEEEEECCEEEEE
GGYEPDEAFSSGVFSERIIGFIDELVNNRGFNRKNIVIMKVGLSLKESYEFGKKFTPNQR
CCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCCC
HKFSVFALSDIIAFGFIEGMKTLGIKPPDNYSIIGYDDLSYSENIELSTVRQPIEELGKV
CEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
SAELLLKKINNKFEDKIHKSLIPEFIERNTN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PSVKDVAKLANVSVGTVSKVLNNDPTVKQKNREKVLKTIKQLNYVPNIYAKSLSSRKTK
CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
MISIVSSTLGDEFHERLVSSIDQILSENGYDSIFFSLLSRERLKRFSNPSHFLYQTDGLI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCEE
VSSLSLTKMFENKTLPTSKPYILVDTRDALNDCAFIDNYYGGKLVGQNIKLYENSKVYIL
EHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEEECCCEEEEECCEEEEE
GGYEPDEAFSSGVFSERIIGFIDELVNNRGFNRKNIVIMKVGLSLKESYEFGKKFTPNQR
CCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHCCCCCCCCC
HKFSVFALSDIIAFGFIEGMKTLGIKPPDNYSIIGYDDLSYSENIELSTVRQPIEELGKV
CEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
SAELLLKKINNKFEDKIHKSLIPEFIERNTN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]