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The map label for this gene is yqfA [C]

Identifier: 160902638

GI number: 160902638

Start: 1262713

End: 1263360

Strand: Direct

Name: yqfA [C]

Synonym: Pmob_1178

Alternate gene names: 160902638

Gene position: 1262713-1263360 (Clockwise)

Preceding gene: 160902637

Following gene: 160902643

Centisome position: 58.2

GC content: 34.88

Gene sequence:

>648_bases
GTGAAAGATTTAGACAATATCGAAAAATTCACCACTGGTGAAGAAGTAGCTAATGCCGTTATACACGGTATAGGAGCATT
GTTGAGTATAGCTGCTCTGGTGTTATTGGTAGTTTTTTCAGCGATTAACGGACAACCTTGGAGTATTTTCAGTTCGGTTA
TATATGGTTCATCGTTGATTATTCTTTATTTATCTTCAACACTATATCACAGCTTTCAACGTAAAAAAATCAAAGATCTC
TTTGAAATATTCGATCATTCTGCAATTTATATTTTAATAGCCGGTACTTACACACCTTTTGCACTAATTACGTTGAGTGG
AAGGCTAGGTTGGATTATATTTTCTGTGGTATGGGTTTTGGCAGCTATAGGCATTATTTTTAAAATATTTTTCGTTAAAA
GGTTTAGGATCCTTTCAACAATTTTATACATAGCCATGGGATGGTTGGTTGTGTTTGCTATGGAACCTTTAGTTACAAAC
TTGGATTTCTGGGGAGTCTTTTGGTTGGTTATAGGAGGCATTCTTTACACACTCGGGACCATATTTTACGTGTGGAGAAA
AATCCCATATCATCATGCTTTATGGCATTTGATAGTACTTGCAGGAAGTATATGCCACTTTTTCTCAGTGTTTTTTTATG
TTATATGA

Upstream 100 bases:

>100_bases
GGCAAGCAAAGTTTTTTAAAAACAATAGATACGATATAATATTTATGGACATTTTGAGAGAAGAATTTCTTGAAATAAAA
GATGGGAAAGGAGCAATAGG

Downstream 100 bases:

>100_bases
GTCTCAGGAGTTTAAAACTCCAAGTGCCAGAGCTGCCAATTTCGATTGATCGTTGTCGGCTCTTGATACTAATACTATGG
GAGCCTTTGCTCCCACTACA

Product: hemolysin III family channel protein

Products: NA

Alternate protein names: Hemolysin III; Hly-III [H]

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MKDLDNIEKFTTGEEVANAVIHGIGALLSIAALVLLVVFSAINGQPWSIFSSVIYGSSLIILYLSSTLYHSFQRKKIKDL
FEIFDHSAIYILIAGTYTPFALITLSGRLGWIIFSVVWVLAAIGIIFKIFFVKRFRILSTILYIAMGWLVVFAMEPLVTN
LDFWGVFWLVIGGILYTLGTIFYVWRKIPYHHALWHLIVLAGSICHFFSVFFYVI

Sequences:

>Translated_215_residues
MKDLDNIEKFTTGEEVANAVIHGIGALLSIAALVLLVVFSAINGQPWSIFSSVIYGSSLIILYLSSTLYHSFQRKKIKDL
FEIFDHSAIYILIAGTYTPFALITLSGRLGWIIFSVVWVLAAIGIIFKIFFVKRFRILSTILYIAMGWLVVFAMEPLVTN
LDFWGVFWLVIGGILYTLGTIFYVWRKIPYHHALWHLIVLAGSICHFFSVFFYVI
>Mature_215_residues
MKDLDNIEKFTTGEEVANAVIHGIGALLSIAALVLLVVFSAINGQPWSIFSSVIYGSSLIILYLSSTLYHSFQRKKIKDL
FEIFDHSAIYILIAGTYTPFALITLSGRLGWIIFSVVWVLAAIGIIFKIFFVKRFRILSTILYIAMGWLVVFAMEPLVTN
LDFWGVFWLVIGGILYTLGTIFYVWRKIPYHHALWHLIVLAGSICHFFSVFFYVI

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI154759275, Length=213, Percent_Identity=30.5164319248826, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI52630445, Length=215, Percent_Identity=29.3023255813954, Blast_Score=87, Evalue=9e-18,
Organism=Homo sapiens, GI154759277, Length=237, Percent_Identity=27.4261603375527, Blast_Score=80, Evalue=1e-15,
Organism=Escherichia coli, GI1789266, Length=208, Percent_Identity=45.1923076923077, Blast_Score=188, Evalue=2e-49,
Organism=Caenorhabditis elegans, GI71996356, Length=217, Percent_Identity=32.7188940092166, Blast_Score=100, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24640324, Length=222, Percent_Identity=28.8288288288288, Blast_Score=84, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 24442; Mature: 24442

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDLDNIEKFTTGEEVANAVIHGIGALLSIAALVLLVVFSAINGQPWSIFSSVIYGSSLI
CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHH
ILYLSSTLYHSFQRKKIKDLFEIFDHSAIYILIAGTYTPFALITLSGRLGWIIFSVVWVL
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHEEECCHHHHHHHHHHHHH
AAIGIIFKIFFVKRFRILSTILYIAMGWLVVFAMEPLVTNLDFWGVFWLVIGGILYTLGT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IFYVWRKIPYHHALWHLIVLAGSICHFFSVFFYVI
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MKDLDNIEKFTTGEEVANAVIHGIGALLSIAALVLLVVFSAINGQPWSIFSSVIYGSSLI
CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHH
ILYLSSTLYHSFQRKKIKDLFEIFDHSAIYILIAGTYTPFALITLSGRLGWIIFSVVWVL
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHEEECCHHHHHHHHHHHHH
AAIGIIFKIFFVKRFRILSTILYIAMGWLVVFAMEPLVTNLDFWGVFWLVIGGILYTLGT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IFYVWRKIPYHHALWHLIVLAGSICHFFSVFFYVI
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7495855 [H]