Click here to switch to the map view.

The map label for this gene is rnfB [H]

Identifier: 160902433

GI number: 160902433

Start: 1029337

End: 1029693

Strand: Direct

Name: rnfB [H]

Synonym: Pmob_0969

Alternate gene names: 160902433

Gene position: 1029337-1029693 (Clockwise)

Preceding gene: 160902432

Following gene: 160902434

Centisome position: 47.44

GC content: 37.82

Gene sequence:

>357_bases
GTGCTCACAATAGTTTATTCGGTGTTATTATTAGGGATTTTAGGGTTTGCTTCCGGTACTTTTTTAGCATTTGCTGCAAA
AAAATTTGAAGTAAAGGAAGATCCAAGAGAAGCTATTGTTAAAGCCGTATTGCCAGGTAATGACTGTGGATCTTGTGGTT
ATCCTGGATGTGCAGCCTTCGCAAAGGCGTTTGTCAAAGGTGAGGTTGGAAAAGACGGTTGTGTTCCTGGCAAATCTCAA
GGTGTCCCAGAACTTTTGGAGAAAATATCTAAGATGTCTGTTGACGAATTGAACAAAATATATGAAGAAAGCGGGGAAGA
CGATTCTAAAATTTTAAAAGTACTAAAACAGAATTAA

Upstream 100 bases:

>100_bases
AAGAAAATAAGTGAAATACTGTCGACACTTTTAAATTAACATATAACTAATATGTGATATAATAATATTAGAAAGAATTT
CTTTGGAGGTGTTTTTTGCA

Downstream 100 bases:

>100_bases
AAAGGGGGGATCAAATTGATCGATCCTATATCCTCTCAACAATACAAGCCACTTTATCTAAGTAGTTTTGATTATGGAAG
TGATCAACTTCCTCACACGA

Product: Fe-S cluster domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MLTIVYSVLLLGILGFASGTFLAFAAKKFEVKEDPREAIVKAVLPGNDCGSCGYPGCAAFAKAFVKGEVGKDGCVPGKSQ
GVPELLEKISKMSVDELNKIYEESGEDDSKILKVLKQN

Sequences:

>Translated_118_residues
MLTIVYSVLLLGILGFASGTFLAFAAKKFEVKEDPREAIVKAVLPGNDCGSCGYPGCAAFAKAFVKGEVGKDGCVPGKSQ
GVPELLEKISKMSVDELNKIYEESGEDDSKILKVLKQN
>Mature_118_residues
MLTIVYSVLLLGILGFASGTFLAFAAKKFEVKEDPREAIVKAVLPGNDCGSCGYPGCAAFAKAFVKGEVGKDGCVPGKSQ
GVPELLEKISKMSVDELNKIYEESGEDDSKILKVLKQN

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=77, Percent_Identity=36.3636363636364, Blast_Score=61, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 12561; Mature: 12561

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTIVYSVLLLGILGFASGTFLAFAAKKFEVKEDPREAIVKAVLPGNDCGSCGYPGCAAF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHH
AKAFVKGEVGKDGCVPGKSQGVPELLEKISKMSVDELNKIYEESGEDDSKILKVLKQN
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure
MLTIVYSVLLLGILGFASGTFLAFAAKKFEVKEDPREAIVKAVLPGNDCGSCGYPGCAAF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHH
AKAFVKGEVGKDGCVPGKSQGVPELLEKISKMSVDELNKIYEESGEDDSKILKVLKQN
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA