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The map label for this gene is degT [H]

Identifier: 160902424

GI number: 160902424

Start: 1019349

End: 1020515

Strand: Direct

Name: degT [H]

Synonym: Pmob_0960

Alternate gene names: 160902424

Gene position: 1019349-1020515 (Clockwise)

Preceding gene: 160902423

Following gene: 160902425

Centisome position: 46.98

GC content: 34.45

Gene sequence:

>1167_bases
ATGGAAGACAAGATGAAGGTTCCTCTTTTTGATTTAACACGACAATACGAAAAATTGAGAAAAAATGTTCTAAAAAAGTT
GGATGCTGTTTTCACTTCTGGAAATGTGGTTATGGGAAGTAATGTAAAAGCCTTAGAAGAGGAAATTGCAAAGTATATAA
ACGTAAAGTACGCTATTGGTGTTGCCAATGGCTCTGATGCCTTAAGGATATCCGTTCAAGCTATAGGTATAAAAGAAGGA
GATTACGTTATCACCACACCATATACTTTTTTTGCAACCGCAAGTGCAATTTTACTGAATGGTGCCACGCCTATATTTGT
GGATGTAGAAGATAAATATTACAACCTTGATTTGGATAAAGTCGAAGATTTGCTTGAGAATCATCCAAAAAAAGAAAAAA
TTAAAGCAATCATTCCCGTACACCTTTTTGGAAAAACCGTTGATTTAGAGAGATTGGAAAGAATAAGAGAGAATTACAAC
ATAAAAATTATAGAAGACGCCGCTCAGTCTATTGGATCTGTATGGCACTTTAAGAATGGTGAAAGAAAATTTAGTGGCAG
CATCGGAGATTTGGGCATATTTTCCTTCTTCCCAACAAAAAATCTAGGTGGTTATGGTGATGGTGGAATGGTTGTTACAA
ACAATGCGGATTTGGCAGATAGGATCAGAAAATTAAGAGTTCATGGTGCTGCAAAAAAATATTATCACGATGAAGTTGGT
TACAATTCAAGATTAGACGAAGTTCAAGCTGCAATATTGAGAATAAAACTAAACAATTTAGATGAATACATTGATAAAAG
AATAAAAAAGGCAAAAAATTATGAAGAATTATTTGAATTACATAACCTCAACGAAGATTTAAGTTATCCTGCTTATTTTA
ACGACAGAACCCATGTCTATCACCAATACGTAGTCACTTTGAATAACCCCAAAGATAGGGATAAATTGAAAAAATTCTTA
GAAAATAAAGGGGTTGGAACATCGATATACTATCCTCTTGGTTTGCACCTTCAAAAGTGCTTTGAGAACCTGGGTTATAA
AGAAGGGGACTTCCCTGTAGCTGAAAATGCATCTAAATCGACGTTAGCCTTGCCAATGTTTCCAGAGCTCACCAAAAAGG
AGCTGGAATACGTAGTTAAAAGTATTAAAGAGTTTTTTTCAAAATAG

Upstream 100 bases:

>100_bases
TCAGAAAAAATTTTGGAAAAGGCAACTGAAAAAAATTTGGAAAAATTATATGTTTTTAAGATAGATGAGGAAGGCAATAT
TTCTTTGGAGGGGAGATGAG

Downstream 100 bases:

>100_bases
TTTTAGAGTTTCTAAAGATAGCGATATTTTAGAAAGAGGAGGACTAAAAAATGGCATTATTGGATAAAATAAAAGATAAA
ACTGCAAAGATAGGGGTAAT

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MEDKMKVPLFDLTRQYEKLRKNVLKKLDAVFTSGNVVMGSNVKALEEEIAKYINVKYAIGVANGSDALRISVQAIGIKEG
DYVITTPYTFFATASAILLNGATPIFVDVEDKYYNLDLDKVEDLLENHPKKEKIKAIIPVHLFGKTVDLERLERIRENYN
IKIIEDAAQSIGSVWHFKNGERKFSGSIGDLGIFSFFPTKNLGGYGDGGMVVTNNADLADRIRKLRVHGAAKKYYHDEVG
YNSRLDEVQAAILRIKLNNLDEYIDKRIKKAKNYEELFELHNLNEDLSYPAYFNDRTHVYHQYVVTLNNPKDRDKLKKFL
ENKGVGTSIYYPLGLHLQKCFENLGYKEGDFPVAENASKSTLALPMFPELTKKELEYVVKSIKEFFSK

Sequences:

>Translated_388_residues
MEDKMKVPLFDLTRQYEKLRKNVLKKLDAVFTSGNVVMGSNVKALEEEIAKYINVKYAIGVANGSDALRISVQAIGIKEG
DYVITTPYTFFATASAILLNGATPIFVDVEDKYYNLDLDKVEDLLENHPKKEKIKAIIPVHLFGKTVDLERLERIRENYN
IKIIEDAAQSIGSVWHFKNGERKFSGSIGDLGIFSFFPTKNLGGYGDGGMVVTNNADLADRIRKLRVHGAAKKYYHDEVG
YNSRLDEVQAAILRIKLNNLDEYIDKRIKKAKNYEELFELHNLNEDLSYPAYFNDRTHVYHQYVVTLNNPKDRDKLKKFL
ENKGVGTSIYYPLGLHLQKCFENLGYKEGDFPVAENASKSTLALPMFPELTKKELEYVVKSIKEFFSK
>Mature_388_residues
MEDKMKVPLFDLTRQYEKLRKNVLKKLDAVFTSGNVVMGSNVKALEEEIAKYINVKYAIGVANGSDALRISVQAIGIKEG
DYVITTPYTFFATASAILLNGATPIFVDVEDKYYNLDLDKVEDLLENHPKKEKIKAIIPVHLFGKTVDLERLERIRENYN
IKIIEDAAQSIGSVWHFKNGERKFSGSIGDLGIFSFFPTKNLGGYGDGGMVVTNNADLADRIRKLRVHGAAKKYYHDEVG
YNSRLDEVQAAILRIKLNNLDEYIDKRIKKAKNYEELFELHNLNEDLSYPAYFNDRTHVYHQYVVTLNNPKDRDKLKKFL
ENKGVGTSIYYPLGLHLQKCFENLGYKEGDFPVAENASKSTLALPMFPELTKKELEYVVKSIKEFFSK

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=377, Percent_Identity=27.8514588859416, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI2367285, Length=332, Percent_Identity=26.2048192771084, Blast_Score=125, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 44293; Mature: 44293

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDKMKVPLFDLTRQYEKLRKNVLKKLDAVFTSGNVVMGSNVKALEEEIAKYINVKYAIG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCEEEEEE
VANGSDALRISVQAIGIKEGDYVITTPYTFFATASAILLNGATPIFVDVEDKYYNLDLDK
ECCCCCEEEEEEEEEEECCCCEEEECCHHHHHHHHHHEECCCCEEEEEECCCEEECCHHH
VEDLLENHPKKEKIKAIIPVHLFGKTVDLERLERIRENYNIKIIEDAAQSIGSVWHFKNG
HHHHHHCCCCHHHHHEEEEEEECCCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCC
ERKFSGSIGDLGIFSFFPTKNLGGYGDGGMVVTNNADLADRIRKLRVHGAAKKYYHDEVG
CEEECCCCCCEEHEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC
YNSRLDEVQAAILRIKLNNLDEYIDKRIKKAKNYEELFELHNLNEDLSYPAYFNDRTHVY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCEECCCCEEE
HQYVVTLNNPKDRDKLKKFLENKGVGTSIYYPLGLHLQKCFENLGYKEGDFPVAENASKS
EEEEEEECCCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
TLALPMFPELTKKELEYVVKSIKEFFSK
EEEECCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEDKMKVPLFDLTRQYEKLRKNVLKKLDAVFTSGNVVMGSNVKALEEEIAKYINVKYAIG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCEEEEEE
VANGSDALRISVQAIGIKEGDYVITTPYTFFATASAILLNGATPIFVDVEDKYYNLDLDK
ECCCCCEEEEEEEEEEECCCCEEEECCHHHHHHHHHHEECCCCEEEEEECCCEEECCHHH
VEDLLENHPKKEKIKAIIPVHLFGKTVDLERLERIRENYNIKIIEDAAQSIGSVWHFKNG
HHHHHHCCCCHHHHHEEEEEEECCCCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCC
ERKFSGSIGDLGIFSFFPTKNLGGYGDGGMVVTNNADLADRIRKLRVHGAAKKYYHDEVG
CEEECCCCCCEEHEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCC
YNSRLDEVQAAILRIKLNNLDEYIDKRIKKAKNYEELFELHNLNEDLSYPAYFNDRTHVY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCEECCCCEEE
HQYVVTLNNPKDRDKLKKFLENKGVGTSIYYPLGLHLQKCFENLGYKEGDFPVAENASKS
EEEEEEECCCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
TLALPMFPELTKKELEYVVKSIKEFFSK
EEEECCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]