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The map label for this gene is ybeY [C]

Identifier: 160902312

GI number: 160902312

Start: 894114

End: 894545

Strand: Direct

Name: ybeY [C]

Synonym: Pmob_0846

Alternate gene names: 160902312

Gene position: 894114-894545 (Clockwise)

Preceding gene: 160902311

Following gene: 160902313

Centisome position: 41.21

GC content: 31.25

Gene sequence:

>432_bases
TTGAAAATAAACGTTATAAACCAACAAGAGTTAAGAGAGATAAACAGTAAAAAAATCAAAGATATCGCCAAAAAAGTACT
TCTAAACGAGGTTGGCAAAGGAAATTTCGAATTAAACATACTAATCACCGACGATAAAAGTATAACTGAATTCAATAAAT
ACAGAGGTAAAAGTACGCCGACGGATGTTTTATCCTTTTCTTATGGTTTAAGCGAACCTGTAATTGGAGATATTGTTATT
TCTGTTGAAAGTATAGAAAAACAAGCGCCTGATTTTGGGAATTCTTTTGAAGAAGAATTCTATTATATACTTATTCATGG
CTTACTACATATCGTTGGTTACGATCATGAAAACTCTGAAGAAGATGCCAAAAAGATGTTTGAAGTTCAAGATCAATATT
TTCATCAATTAATCAAAGACAGGAGGAGATAG

Upstream 100 bases:

>100_bases
AAAAGGCAGAATTATTAGAACCATCATGGAAATGAACCATAAAAGGATATCCTATCCCAAAGTTGAGGCAAAAGAACTTA
GAGAGTAGAGGAGAACGCCT

Downstream 100 bases:

>100_bases
AGTTGGCTACAGTGAAGCCCTTTCAAGCTTTAAGACCATATAAAGGGATAGAACAGTGTTTTTCTTGCCCCCCCTACGAC
GTACTTGAGGAGGATGAAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MKINVINQQELREINSKKIKDIAKKVLLNEVGKGNFELNILITDDKSITEFNKYRGKSTPTDVLSFSYGLSEPVIGDIVI
SVESIEKQAPDFGNSFEEEFYYILIHGLLHIVGYDHENSEEDAKKMFEVQDQYFHQLIKDRRR

Sequences:

>Translated_143_residues
MKINVINQQELREINSKKIKDIAKKVLLNEVGKGNFELNILITDDKSITEFNKYRGKSTPTDVLSFSYGLSEPVIGDIVI
SVESIEKQAPDFGNSFEEEFYYILIHGLLHIVGYDHENSEEDAKKMFEVQDQYFHQLIKDRRR
>Mature_143_residues
MKINVINQQELREINSKKIKDIAKKVLLNEVGKGNFELNILITDDKSITEFNKYRGKSTPTDVLSFSYGLSEPVIGDIVI
SVESIEKQAPDFGNSFEEEFYYILIHGLLHIVGYDHENSEEDAKKMFEVQDQYFHQLIKDRRR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=85, Percent_Identity=37.6470588235294, Blast_Score=66, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_PETMO (A9BHG1)

Other databases:

- EMBL:   CP000879
- RefSeq:   YP_001567893.1
- ProteinModelPortal:   A9BHG1
- SMR:   A9BHG1
- GeneID:   5758102
- GenomeReviews:   CP000879_GR
- KEGG:   pmo:Pmob_0846
- HOGENOM:   HBG734136
- OMA:   LMEEDVY
- ProtClustDB:   CLSK2541133
- BioCyc:   PMOB403833:PMOB_0846-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 16628; Mature: 16628

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKINVINQQELREINSKKIKDIAKKVLLNEVGKGNFELNILITDDKSITEFNKYRGKSTP
CEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHCCCCCC
TDVLSFSYGLSEPVIGDIVISVESIEKQAPDFGNSFEEEFYYILIHGLLHIVGYDHENSE
HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
EDAKKMFEVQDQYFHQLIKDRRR
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKINVINQQELREINSKKIKDIAKKVLLNEVGKGNFELNILITDDKSITEFNKYRGKSTP
CEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHCCCCCC
TDVLSFSYGLSEPVIGDIVISVESIEKQAPDFGNSFEEEFYYILIHGLLHIVGYDHENSE
HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
EDAKKMFEVQDQYFHQLIKDRRR
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA