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The map label for this gene is ygaF [H]

Identifier: 160901625

GI number: 160901625

Start: 136670

End: 137158

Strand: Direct

Name: ygaF [H]

Synonym: Pmob_0135

Alternate gene names: 160901625

Gene position: 136670-137158 (Clockwise)

Preceding gene: 160901624

Following gene: 160901627

Centisome position: 6.3

GC content: 32.72

Gene sequence:

>489_bases
ATGAGATATCTAAATTTTGAAATAGGCGATAAAATCCCAGAGTTTTCACTTAAAGATGCTGATGGTGATCAGATTAATAT
CAAGGATTTTATGGGAAAATGGCTTGTGCTTTATTTCTATCCACGGGATAACACACCTGGTTGTACTAAAGAAGCCGTTG
ATTTTTCAAATTACTTAGAAGAGTTCAAAAAGTATAATTGTCAAATAGTGGGAGTAAGTCCCGATACTGCAGAAAAACAT
GCAAACTTTAAAGAAAAAAATGATTTAAAAGTGATTTTGCTAAGTGACCCCGAACATTCCATTCTTGAAAAATTTGGCGT
TTGGCAACTAAAAAAGAATTATGGTAAAGAAAATTGGGGAGTTGTCAGATCAACAATCCTGATAGATCCAAATGGAATAA
TTAAAAAAGTGTGGGAAAATGTAAGGGTAAAAGATCATGTTTTAGAAGTATTGGAAAGCTTGAAAGAACTATCAAACAAC
AGGGAGTAA

Upstream 100 bases:

>100_bases
AACCATTGGAAGTGTTCCAAATTTTGGACCCACAGGTCCATATATCACTTTTAGAATAGGTGGTGGAGGACTAGCTTTTT
AATAAAGGAGAGGGTTTAAA

Downstream 100 bases:

>100_bases
ACTCCCTGTTGTTTATAATAGCCTATTTTATTGAATCATTCTACTGCCTACTACCTAGTTGACCATTGAACATGAACAAA
GCGGTTTTACTTTCACCGAT

Product: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen

Products: NA

Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MRYLNFEIGDKIPEFSLKDADGDQINIKDFMGKWLVLYFYPRDNTPGCTKEAVDFSNYLEEFKKYNCQIVGVSPDTAEKH
ANFKEKNDLKVILLSDPEHSILEKFGVWQLKKNYGKENWGVVRSTILIDPNGIIKKVWENVRVKDHVLEVLESLKELSNN
RE

Sequences:

>Translated_162_residues
MRYLNFEIGDKIPEFSLKDADGDQINIKDFMGKWLVLYFYPRDNTPGCTKEAVDFSNYLEEFKKYNCQIVGVSPDTAEKH
ANFKEKNDLKVILLSDPEHSILEKFGVWQLKKNYGKENWGVVRSTILIDPNGIIKKVWENVRVKDHVLEVLESLKELSNN
RE
>Mature_162_residues
MRYLNFEIGDKIPEFSLKDADGDQINIKDFMGKWLVLYFYPRDNTPGCTKEAVDFSNYLEEFKKYNCQIVGVSPDTAEKH
ANFKEKNDLKVILLSDPEHSILEKFGVWQLKKNYGKENWGVVRSTILIDPNGIIKKVWENVRVKDHVLEVLESLKELSNN
RE

Specific function: Unknown

COG id: COG1225

COG function: function code O; Peroxiredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI4505591, Length=170, Percent_Identity=31.7647058823529, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI32455266, Length=170, Percent_Identity=31.7647058823529, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI32455264, Length=170, Percent_Identity=31.7647058823529, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI32189392, Length=169, Percent_Identity=30.1775147928994, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI5802974, Length=142, Percent_Identity=36.6197183098592, Blast_Score=71, Evalue=4e-13,
Organism=Homo sapiens, GI32483377, Length=141, Percent_Identity=36.8794326241135, Blast_Score=71, Evalue=4e-13,
Organism=Homo sapiens, GI5453549, Length=158, Percent_Identity=26.5822784810127, Blast_Score=67, Evalue=9e-12,
Organism=Homo sapiens, GI33188454, Length=86, Percent_Identity=36.046511627907, Blast_Score=65, Evalue=3e-11,
Organism=Escherichia coli, GI1788825, Length=151, Percent_Identity=41.7218543046358, Blast_Score=126, Evalue=6e-31,
Organism=Escherichia coli, GI1786822, Length=138, Percent_Identity=28.9855072463768, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17554494, Length=160, Percent_Identity=30, Blast_Score=68, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI32565831, Length=173, Percent_Identity=27.7456647398844, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI193204376, Length=173, Percent_Identity=27.7456647398844, Blast_Score=67, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6322180, Length=161, Percent_Identity=35.4037267080745, Blast_Score=82, Evalue=4e-17,
Organism=Drosophila melanogaster, GI17738015, Length=164, Percent_Identity=32.3170731707317, Blast_Score=71, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24656348, Length=176, Percent_Identity=26.7045454545455, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI17864676, Length=176, Percent_Identity=26.7045454545455, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000866
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00578 AhpC-TSA [H]

EC number: =1.11.1.15 [H]

Molecular weight: Translated: 18914; Mature: 18914

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYLNFEIGDKIPEFSLKDADGDQINIKDFMGKWLVLYFYPRDNTPGCTKEAVDFSNYLE
CCEECCCCCCCCCCCCCCCCCCCEEEHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHH
EFKKYNCQIVGVSPDTAEKHANFKEKNDLKVILLSDPEHSILEKFGVWQLKKNYGKENWG
HHHHCCCEEEEECCCCHHHHCCCCCCCCEEEEEECCCCHHHHHHHCHHHHHHHCCCCCCC
VVRSTILIDPNGIIKKVWENVRVKDHVLEVLESLKELSNNRE
EEEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRYLNFEIGDKIPEFSLKDADGDQINIKDFMGKWLVLYFYPRDNTPGCTKEAVDFSNYLE
CCEECCCCCCCCCCCCCCCCCCCEEEHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHH
EFKKYNCQIVGVSPDTAEKHANFKEKNDLKVILLSDPEHSILEKFGVWQLKKNYGKENWG
HHHHCCCEEEEECCCCHHHHCCCCCCCCEEEEEECCCCHHHHHHHCHHHHHHHCCCCCCC
VVRSTILIDPNGIIKKVWENVRVKDHVLEVLESLKELSNNRE
EEEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]