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The map label for this gene is ymdB [C]

Identifier: 160901566

GI number: 160901566

Start: 71051

End: 71599

Strand: Direct

Name: ymdB [C]

Synonym: Pmob_0075

Alternate gene names: 160901566

Gene position: 71051-71599 (Clockwise)

Preceding gene: 160901560

Following gene: 160901567

Centisome position: 3.27

GC content: 33.33

Gene sequence:

>549_bases
ATGAACAAAATTATAAAACAACTAAAAGTCAACAACGTTGAAATTAAATTGGTATCCGGTGATATAACTACCGAAGAAAC
AGATGCTATTGTAAATGCTGCTAATTCGCATTTGCAACATGGTGGTGGAGTGGCTGGAGCAATATCCAGAAAAGGAGGAC
CAGGTATTCAAAAAGAATCGAACGAATATATCCAAAAATACGGTAAAGTCGAAACGGGAAATGTTGCAGTTACATCTGGA
GGAAAGTTAAAATGTAAATACATAATCCATGCAGTTGGACCTATTTGGAGGAGAGGCAGTCAACAAGAAGAAAAGTTATT
GTATGATGCAGTTTTCAATGCTTTGAAAAAAGCAGAAGAATTAAAATTGAATTCAATAGCCTTACCTGCTATAAGTGCAG
GTATATACGGTTATCCAATAGAAAAAGCGGTTCTCGTTTACAAAAAAGCAGTCTATGATTTTATTAATTCCAATCCACAA
TTTGTAAAAGAAATCAGATTTGTAATATATGACGAAGCCCATTTAGATTATTTTTTGAAAGAATTTTGA

Upstream 100 bases:

>100_bases
GGGGTTTTTAAGGGGGTTCCCCTTAACGATCGGCGCTAAAACAAGTTTTAGATCTTCTTCTAAAGAGAGTAAATCAAAAA
TTAAACGGAGGCGTTAATGT

Downstream 100 bases:

>100_bases
GAGTATGAGTTTTCTAACAACTGTACACTATTATTATTCTCTACGAAAAAATCTTAATTATTCAAGAAAAAAGATATTAG
CATTAAGGGAAAAGAAATTT

Product: appr-1-p processing domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MNKIIKQLKVNNVEIKLVSGDITTEETDAIVNAANSHLQHGGGVAGAISRKGGPGIQKESNEYIQKYGKVETGNVAVTSG
GKLKCKYIIHAVGPIWRRGSQQEEKLLYDAVFNALKKAEELKLNSIALPAISAGIYGYPIEKAVLVYKKAVYDFINSNPQ
FVKEIRFVIYDEAHLDYFLKEF

Sequences:

>Translated_182_residues
MNKIIKQLKVNNVEIKLVSGDITTEETDAIVNAANSHLQHGGGVAGAISRKGGPGIQKESNEYIQKYGKVETGNVAVTSG
GKLKCKYIIHAVGPIWRRGSQQEEKLLYDAVFNALKKAEELKLNSIALPAISAGIYGYPIEKAVLVYKKAVYDFINSNPQ
FVKEIRFVIYDEAHLDYFLKEF
>Mature_182_residues
MNKIIKQLKVNNVEIKLVSGDITTEETDAIVNAANSHLQHGGGVAGAISRKGGPGIQKESNEYIQKYGKVETGNVAVTSG
GKLKCKYIIHAVGPIWRRGSQQEEKLLYDAVFNALKKAEELKLNSIALPAISAGIYGYPIEKAVLVYKKAVYDFINSNPQ
FVKEIRFVIYDEAHLDYFLKEF

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI226371718, Length=181, Percent_Identity=33.7016574585635, Blast_Score=113, Evalue=8e-26,
Organism=Homo sapiens, GI226371710, Length=181, Percent_Identity=33.7016574585635, Blast_Score=113, Evalue=1e-25,
Organism=Homo sapiens, GI226371706, Length=181, Percent_Identity=33.7016574585635, Blast_Score=113, Evalue=1e-25,
Organism=Homo sapiens, GI226371716, Length=181, Percent_Identity=33.7016574585635, Blast_Score=113, Evalue=1e-25,
Organism=Homo sapiens, GI226371714, Length=181, Percent_Identity=33.7016574585635, Blast_Score=113, Evalue=1e-25,
Organism=Homo sapiens, GI226371712, Length=181, Percent_Identity=33.7016574585635, Blast_Score=113, Evalue=1e-25,
Organism=Homo sapiens, GI117968621, Length=171, Percent_Identity=37.4269005847953, Blast_Score=105, Evalue=3e-23,
Organism=Homo sapiens, GI154813199, Length=166, Percent_Identity=35.5421686746988, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI13569840, Length=174, Percent_Identity=35.0574712643678, Blast_Score=100, Evalue=7e-22,
Organism=Homo sapiens, GI20336746, Length=170, Percent_Identity=31.1764705882353, Blast_Score=95, Evalue=3e-20,
Organism=Homo sapiens, GI165377137, Length=176, Percent_Identity=30.6818181818182, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI93141018, Length=158, Percent_Identity=30.379746835443, Blast_Score=85, Evalue=4e-17,
Organism=Homo sapiens, GI93141020, Length=158, Percent_Identity=30.379746835443, Blast_Score=85, Evalue=4e-17,
Organism=Homo sapiens, GI4758496, Length=158, Percent_Identity=30.379746835443, Blast_Score=85, Evalue=4e-17,
Organism=Homo sapiens, GI207450721, Length=161, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=2e-14,
Organism=Homo sapiens, GI8923143, Length=161, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI8923920, Length=173, Percent_Identity=25.4335260115607, Blast_Score=67, Evalue=7e-12,
Organism=Homo sapiens, GI22749259, Length=175, Percent_Identity=29.7142857142857, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1787283, Length=165, Percent_Identity=43.030303030303, Blast_Score=133, Evalue=7e-33,
Organism=Caenorhabditis elegans, GI17538214, Length=173, Percent_Identity=33.5260115606936, Blast_Score=87, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24586353, Length=148, Percent_Identity=30.4054054054054, Blast_Score=70, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro; PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 20160; Mature: 20160

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKIIKQLKVNNVEIKLVSGDITTEETDAIVNAANSHLQHGGGVAGAISRKGGPGIQKES
CCHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCH
NEYIQKYGKVETGNVAVTSGGKLKCKYIIHAVGPIWRRGSQQEEKLLYDAVFNALKKAEE
HHHHHHHCCCCCCCEEEECCCCEEEEHHEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LKLNSIALPAISAGIYGYPIEKAVLVYKKAVYDFINSNPQFVKEIRFVIYDEAHLDYFLK
HCCCCEECHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHH
EF
CC
>Mature Secondary Structure
MNKIIKQLKVNNVEIKLVSGDITTEETDAIVNAANSHLQHGGGVAGAISRKGGPGIQKES
CCHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCH
NEYIQKYGKVETGNVAVTSGGKLKCKYIIHAVGPIWRRGSQQEEKLLYDAVFNALKKAEE
HHHHHHHCCCCCCCEEEECCCCEEEEHHEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LKLNSIALPAISAGIYGYPIEKAVLVYKKAVYDFINSNPQFVKEIRFVIYDEAHLDYFLK
HCCCCEECHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHH
EF
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]