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The map label for this gene is nqrD [H]

Identifier: 160901555

GI number: 160901555

Start: 60570

End: 61181

Strand: Direct

Name: nqrD [H]

Synonym: Pmob_0064

Alternate gene names: 160901555

Gene position: 60570-61181 (Clockwise)

Preceding gene: 160901554

Following gene: 160901556

Centisome position: 2.79

GC content: 34.97

Gene sequence:

>612_bases
ATGGCTCAGAAAAGTTGGATAGAAATTGCTAAAGATAATTTATGGTATAACAATCCTGTATTCATCCAAATACTCGGAAT
ATGTTCCACATTAGCGGTAACTAACACTTTAATAAACACATCCATTATGACTCTGGGAGTCGTTTTTGTGACAGGCTTAT
CGGCGTTGACGGTTTCTTTGTTAAAATCTTTCATTCCTAGGAAAGTCAGAATGATAGCCCAAACTTTGATAATATCTTTT
TATGTTATAATTGTTGATATCGTTCTACGGGCTTATGTACCTGATGTCAGTAGAGCCTTGGGACCTTACGTAGGTTTGAT
CATAACTAATTGTATAATAATGGGAAGAACAGAAGCTTTTGCTCAATCTAACCCTCCATTACTTTCTCTGTGGGATGGTT
TAACTAGTGGAATAGGGTATATGTATGTTCTTTTGATGGTTGCATTTGTGAGGGAGTTATTGGGCTTTGGAACAGTTTTT
GGATTTCAAGTATTACCAGATAACTTTGTAAATTGGACTATAATGGTTATGCCTCCAAGTGCCTTCTTTATGTTAGCTAT
TTTTATATGGATACTCAAAGGTTACCAGTTTAGAAAGGAGGTTAAAAAATAA

Upstream 100 bases:

>100_bases
TTGATGCAATAACCGGTGCAACAAGAACTTCTGAGTCTATTGAAAGAATTGTAAACGAGACGATTGCAAATTTGAAAGAT
ATTCTGGGGGTGAATAGTTA

Downstream 100 bases:

>100_bases
TGTCCCCTGACGTAGGTTTGATATCTTTATTCTTTGCTTCTATTTTTACAAGCAACATACTTCTTGCAAATTTTTTAGGA
ATGTGTTCCTTTATATCGGT

Product: RnfA-Nqr electron transport subunit

Products: NA

Alternate protein names: Na(+)-NQR subunit D; Na(+)-translocating NQR subunit D; NQR complex subunit D; NQR-1 subunit D [H]

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MAQKSWIEIAKDNLWYNNPVFIQILGICSTLAVTNTLINTSIMTLGVVFVTGLSALTVSLLKSFIPRKVRMIAQTLIISF
YVIIVDIVLRAYVPDVSRALGPYVGLIITNCIIMGRTEAFAQSNPPLLSLWDGLTSGIGYMYVLLMVAFVRELLGFGTVF
GFQVLPDNFVNWTIMVMPPSAFFMLAIFIWILKGYQFRKEVKK

Sequences:

>Translated_203_residues
MAQKSWIEIAKDNLWYNNPVFIQILGICSTLAVTNTLINTSIMTLGVVFVTGLSALTVSLLKSFIPRKVRMIAQTLIISF
YVIIVDIVLRAYVPDVSRALGPYVGLIITNCIIMGRTEAFAQSNPPLLSLWDGLTSGIGYMYVLLMVAFVRELLGFGTVF
GFQVLPDNFVNWTIMVMPPSAFFMLAIFIWILKGYQFRKEVKK
>Mature_202_residues
AQKSWIEIAKDNLWYNNPVFIQILGICSTLAVTNTLINTSIMTLGVVFVTGLSALTVSLLKSFIPRKVRMIAQTLIISFY
VIIVDIVLRAYVPDVSRALGPYVGLIITNCIIMGRTEAFAQSNPPLLSLWDGLTSGIGYMYVLLMVAFVRELLGFGTVFG
FQVLPDNFVNWTIMVMPPSAFFMLAIFIWILKGYQFRKEVKK

Specific function: NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to nqrE are probably involved in the second step, the conversion of ubisemiqui

COG id: COG1347

COG function: function code C; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=206, Percent_Identity=33.0097087378641, Blast_Score=98, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011292 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 22774; Mature: 22643

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQKSWIEIAKDNLWYNNPVFIQILGICSTLAVTNTLINTSIMTLGVVFVTGLSALTVSL
CCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKSFIPRKVRMIAQTLIISFYVIIVDIVLRAYVPDVSRALGPYVGLIITNCIIMGRTEAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHH
AQSNPPLLSLWDGLTSGIGYMYVLLMVAFVRELLGFGTVFGFQVLPDNFVNWTIMVMPPS
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCH
AFFMLAIFIWILKGYQFRKEVKK
HHHHHHHHHHHHCCHHHHHHHCC
>Mature Secondary Structure 
AQKSWIEIAKDNLWYNNPVFIQILGICSTLAVTNTLINTSIMTLGVVFVTGLSALTVSL
CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKSFIPRKVRMIAQTLIISFYVIIVDIVLRAYVPDVSRALGPYVGLIITNCIIMGRTEAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHH
AQSNPPLLSLWDGLTSGIGYMYVLLMVAFVRELLGFGTVFGFQVLPDNFVNWTIMVMPPS
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCH
AFFMLAIFIWILKGYQFRKEVKK
HHHHHHHHHHHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA