Click here to switch to the map view.

The map label for this gene is rfaB [H]

Identifier: 160877576

GI number: 160877576

Start: 5286729

End: 5287814

Strand: Reverse

Name: rfaB [H]

Synonym: Sbal195_4475

Alternate gene names: 160877576

Gene position: 5287814-5286729 (Counterclockwise)

Preceding gene: 160877577

Following gene: 160877575

Centisome position: 98.89

GC content: 43.83

Gene sequence:

>1086_bases
ATGCGGATAGCCATTGCCATTGACAGTTTAGCGGGTGGCGGAGCCGAAAAGGTCATGATTACCTTAGCCAAGCAATTTAT
TCGCTTAGGGCATGAGCCGCATTTTTTAGTCATGGAGGATAATCGCTATTATGAAACCCCAGAGGACTTACCCGTTCATC
AATGTTTTGCCCCTAAGGATAAAGATTTCGACCATTTTGGTCGATTGAATGCTTCTGTTCACAAGCTCAGCGCAAAAATC
GCTGAAATTGAATCTAAAGTGGGCAAGTTCGATTTGTTTTTATCTAACTTAGATAAAACTAATTTGATGATGACCAAAAC
GGGCGTTTCGCCGCTTTATGTCGTAGTCCATTCCTCAGTGGAAGAAGAGTTGAGCCGCCAATTTAAATTGGGGCCGTTCG
CGTACTTTAAAAAGCTCAGAGCCAAAAAAGCGCTCAATGGCCAGCATTTGATTACCGTCTCAAATGGCATAGCAAATGAG
ATCAAAGATAAAGGTCTTTTGCATCCAGCATCGATGCAGACTATCTATAATCCATTTGAGTTTAATGACATCACATCTCA
ATCACAGCAAGATAATCCGAAAATTCCTCAGGGTGATTATCTTATTCATGTCGGTCGCTTTGCTAAGCAAAAACGCCATG
ATGTGCTGTTTGAAGCCCTCAAGCTCACGCAAAATCAGCTTCCCGTGGTGCTCTTGTGCCACAACCACAAGAAAGCGATA
AAAGCGGCGAAAAAGTTCGGTATTGAAAAGCGATTAATTATTCCCGGTTTCCAAAGCAATCCTTTTCCTTGGATTAAGCA
GGCTAAGGCATTAGTGCTTAGCTCCGATTTTGAAGGCCTGCCGACAGTCTTGATTGAATCGTTAGCGTGTGGGACGCCTG
TGGTGAGTACTGATTGTCCCCATGGTCCTAGTGAGATTTTAACTGGGAATTTAGCACCGTATCTTGTGCCGCGTCGCGAT
CCTGCGGCGTTAGCAAAAATGATAGATGAGGTAGTCAGCCAACCGCCATCCTTTGAACAGGTGGATATTTTGGCCAAAGT
GGATGCCACCTTAATTGCTGAACAATATTTAGCGTTGGCCAAATAA

Upstream 100 bases:

>100_bases
CTCAGTTAAAGCTTGTTAGTATCGTGCATTCTTGTTCAGCACTCTTGAAATATCGCTGCATTAGCGGTGGGTATTCAGAA
TATCGTTTAGGAGATAAATC

Downstream 100 bases:

>100_bases
TTTAACAATTTATTTTAGGAGGATGCGGGTGGAAGAAGTCAAACAAGCCAAAAGACGTTACTTATTTTACATAGCGCAAA
ACTATTCCTATGCGATGTTA

Product: group 1 glycosyl transferase

Products: NA

Alternate protein names: UDP-D-galactose--(Glucosyl)lipopolysaccharide-alpha-1,3-D-galactosyltransferase [H]

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MRIAIAIDSLAGGGAEKVMITLAKQFIRLGHEPHFLVMEDNRYYETPEDLPVHQCFAPKDKDFDHFGRLNASVHKLSAKI
AEIESKVGKFDLFLSNLDKTNLMMTKTGVSPLYVVVHSSVEEELSRQFKLGPFAYFKKLRAKKALNGQHLITVSNGIANE
IKDKGLLHPASMQTIYNPFEFNDITSQSQQDNPKIPQGDYLIHVGRFAKQKRHDVLFEALKLTQNQLPVVLLCHNHKKAI
KAAKKFGIEKRLIIPGFQSNPFPWIKQAKALVLSSDFEGLPTVLIESLACGTPVVSTDCPHGPSEILTGNLAPYLVPRRD
PAALAKMIDEVVSQPPSFEQVDILAKVDATLIAEQYLALAK

Sequences:

>Translated_361_residues
MRIAIAIDSLAGGGAEKVMITLAKQFIRLGHEPHFLVMEDNRYYETPEDLPVHQCFAPKDKDFDHFGRLNASVHKLSAKI
AEIESKVGKFDLFLSNLDKTNLMMTKTGVSPLYVVVHSSVEEELSRQFKLGPFAYFKKLRAKKALNGQHLITVSNGIANE
IKDKGLLHPASMQTIYNPFEFNDITSQSQQDNPKIPQGDYLIHVGRFAKQKRHDVLFEALKLTQNQLPVVLLCHNHKKAI
KAAKKFGIEKRLIIPGFQSNPFPWIKQAKALVLSSDFEGLPTVLIESLACGTPVVSTDCPHGPSEILTGNLAPYLVPRRD
PAALAKMIDEVVSQPPSFEQVDILAKVDATLIAEQYLALAK
>Mature_361_residues
MRIAIAIDSLAGGGAEKVMITLAKQFIRLGHEPHFLVMEDNRYYETPEDLPVHQCFAPKDKDFDHFGRLNASVHKLSAKI
AEIESKVGKFDLFLSNLDKTNLMMTKTGVSPLYVVVHSSVEEELSRQFKLGPFAYFKKLRAKKALNGQHLITVSNGIANE
IKDKGLLHPASMQTIYNPFEFNDITSQSQQDNPKIPQGDYLIHVGRFAKQKRHDVLFEALKLTQNQLPVVLLCHNHKKAI
KAAKKFGIEKRLIIPGFQSNPFPWIKQAKALVLSSDFEGLPTVLIESLACGTPVVSTDCPHGPSEILTGNLAPYLVPRRD
PAALAKMIDEVVSQPPSFEQVDILAKVDATLIAEQYLALAK

Specific function: Adds a galactose goup to a glucose group of LPS [H]

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

Organism=Escherichia coli, GI226510984, Length=242, Percent_Identity=25.6198347107438, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: 2.4.1.- [C]

Molecular weight: Translated: 40171; Mature: 40171

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIAIAIDSLAGGGAEKVMITLAKQFIRLGHEPHFLVMEDNRYYETPEDLPVHQCFAPKD
CEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHCCCCC
KDFDHFGRLNASVHKLSAKIAEIESKVGKFDLFLSNLDKTNLMMTKTGVSPLYVVVHSSV
CCHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEECCCCEEEEEEHHHH
EEELSRQFKLGPFAYFKKLRAKKALNGQHLITVSNGIANEIKDKGLLHPASMQTIYNPFE
HHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCHHHHHHCCCCC
FNDITSQSQQDNPKIPQGDYLIHVGRFAKQKRHDVLFEALKLTQNQLPVVLLCHNHKKAI
CCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHH
KAAKKFGIEKRLIIPGFQSNPFPWIKQAKALVLSSDFEGLPTVLIESLACGTPVVSTDCP
HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHEEECCCCCHHHHHHHHHHCCCCCCCCCCC
HGPSEILTGNLAPYLVPRRDPAALAKMIDEVVSQPPSFEQVDILAKVDATLIAEQYLALA
CCCHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC
K
C
>Mature Secondary Structure
MRIAIAIDSLAGGGAEKVMITLAKQFIRLGHEPHFLVMEDNRYYETPEDLPVHQCFAPKD
CEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHCCCCC
KDFDHFGRLNASVHKLSAKIAEIESKVGKFDLFLSNLDKTNLMMTKTGVSPLYVVVHSSV
CCHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEECCCCEEEEEEHHHH
EEELSRQFKLGPFAYFKKLRAKKALNGQHLITVSNGIANEIKDKGLLHPASMQTIYNPFE
HHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCHHHHHHCCCCC
FNDITSQSQQDNPKIPQGDYLIHVGRFAKQKRHDVLFEALKLTQNQLPVVLLCHNHKKAI
CCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHH
KAAKKFGIEKRLIIPGFQSNPFPWIKQAKALVLSSDFEGLPTVLIESLACGTPVVSTDCP
HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHEEECCCCCHHHHHHHHHHCCCCCCCCCCC
HGPSEILTGNLAPYLVPRRDPAALAKMIDEVVSQPPSFEQVDILAKVDATLIAEQYLALA
CCCHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Hexosyltransferases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1624461; 8041620; 9278503 [H]