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The map label for this gene is rssB [H]

Identifier: 160877430

GI number: 160877430

Start: 5112238

End: 5112915

Strand: Reverse

Name: rssB [H]

Synonym: Sbal195_4328

Alternate gene names: 160877430

Gene position: 5112915-5112238 (Counterclockwise)

Preceding gene: 160877431

Following gene: 160877429

Centisome position: 95.62

GC content: 44.4

Gene sequence:

>678_bases
ATGTTGATATTACTGGTTGAAGATAATCGACTTCTCTCTAACAACATCATTCAATATCTTGAATTGAGTGGCATAGAGTG
CGATTACGCTTTCAACCTAGCTCAGGCTGATATGCTAATTAGCCAGCAGCAATTTGACGCTATTATTCTCGACCTAAATT
TGCCAGATGGTGATGGGATTGAAGCATGTGAACGCTGGAAAGCACAGTGCATTACTTCGCCCATAATAATGTTAACCGCA
CGTAGCAGTCTGAATGAGCGCTTGAATGGGTTTGCTGTTGGCGCGGATGATTATTTAGTAAAACCATTTGCAATGGAGGA
ACTCGTCGCGCGATTGAAGGTGGTTGCTCAGCGTCGTCTGGCGCCTCAAAGGCTAGTCATTGGTGAGCTAGAAATTGATT
TTGGAAACCATAGGGTATATCGCCAAGGACAGCTTCTTGCTTTACCTAAAACAGGCTGGCAGATCCTTGTTTTATTAGCT
CGGCGTAGCCCAGAAACTGTGAGTAGAGAAGAGATTGAGCGAACGATTTGGCCCAATAGTGCACCTGATAGTGATAGTTT
ACGCAGCCATATCCATCTGTTACGAAGGGTGATAGATCGACCCTTTGAACGACAAATATTGCATACGATTCGTGGAGTCG
GTCTAAGCCTTAGGGATGACATCAATGCAAGCTCCTAA

Upstream 100 bases:

>100_bases
GAGGAGTTGAATATCATATGGAAGCTATGCGCAAGAAATTTGGGGCTACAAATAGAGCAAACTTAATCCATTTAGCCCAT
CAATATGAGTTGATCTAAAT

Downstream 100 bases:

>100_bases
GCTTAGCCTCAAGCGGAGCTACCAAGTATGGGGTGTTATTTTTCTATTAATAACATTAGGTATTAATAGCTTTATACCAC
TGTGCATGATGTGTGCAGGT

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MLILLVEDNRLLSNNIIQYLELSGIECDYAFNLAQADMLISQQQFDAIILDLNLPDGDGIEACERWKAQCITSPIIMLTA
RSSLNERLNGFAVGADDYLVKPFAMEELVARLKVVAQRRLAPQRLVIGELEIDFGNHRVYRQGQLLALPKTGWQILVLLA
RRSPETVSREEIERTIWPNSAPDSDSLRSHIHLLRRVIDRPFERQILHTIRGVGLSLRDDINASS

Sequences:

>Translated_225_residues
MLILLVEDNRLLSNNIIQYLELSGIECDYAFNLAQADMLISQQQFDAIILDLNLPDGDGIEACERWKAQCITSPIIMLTA
RSSLNERLNGFAVGADDYLVKPFAMEELVARLKVVAQRRLAPQRLVIGELEIDFGNHRVYRQGQLLALPKTGWQILVLLA
RRSPETVSREEIERTIWPNSAPDSDSLRSHIHLLRRVIDRPFERQILHTIRGVGLSLRDDINASS
>Mature_225_residues
MLILLVEDNRLLSNNIIQYLELSGIECDYAFNLAQADMLISQQQFDAIILDLNLPDGDGIEACERWKAQCITSPIIMLTA
RSSLNERLNGFAVGADDYLVKPFAMEELVARLKVVAQRRLAPQRLVIGELEIDFGNHRVYRQGQLLALPKTGWQILVLLA
RRSPETVSREEIERTIWPNSAPDSDSLRSHIHLLRRVIDRPFERQILHTIRGVGLSLRDDINASS

Specific function: Member of the two-component regulatory system rssA/rssB involved in regulation of swarming motility which has been shown to be inhibited by saturated fatty acids. RssA/rssB regulates cellular fatty acid composition, hemolysin production and cell surface t

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1790552, Length=221, Percent_Identity=34.841628959276, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1789402, Length=220, Percent_Identity=34.0909090909091, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI87082012, Length=219, Percent_Identity=35.1598173515982, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI1787375, Length=217, Percent_Identity=29.0322580645161, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1786784, Length=221, Percent_Identity=31.6742081447964, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1789809, Length=223, Percent_Identity=29.1479820627803, Blast_Score=100, Evalue=6e-23,
Organism=Escherichia coli, GI1786599, Length=219, Percent_Identity=31.0502283105023, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1786911, Length=221, Percent_Identity=30.7692307692308, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1788394, Length=219, Percent_Identity=31.5068493150685, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI2367329, Length=224, Percent_Identity=31.6964285714286, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1790860, Length=225, Percent_Identity=29.7777777777778, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1787229, Length=228, Percent_Identity=27.1929824561404, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1790863, Length=232, Percent_Identity=23.2758620689655, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1788550, Length=123, Percent_Identity=28.4552845528455, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI1788713, Length=101, Percent_Identity=34.6534653465347, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 25553; Mature: 25553

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILLVEDNRLLSNNIIQYLELSGIECDYAFNLAQADMLISQQQFDAIILDLNLPDGDGI
CEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCH
EACERWKAQCITSPIIMLTARSSLNERLNGFAVGADDYLVKPFAMEELVARLKVVAQRRL
HHHHHHHHHHHCCCEEEEEEHHHHHHHHCCEEECCCCCEECHHHHHHHHHHHHHHHHHHC
APQRLVIGELEIDFGNHRVYRQGQLLALPKTGWQILVLLARRSPETVSREEIERTIWPNS
CCCCEEEEEEEEECCCCEEEECCCEEEECCCCCEEEEEECCCCCCCCCHHHHHHHCCCCC
APDSDSLRSHIHLLRRVIDRPFERQILHTIRGVGLSLRDDINASS
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MLILLVEDNRLLSNNIIQYLELSGIECDYAFNLAQADMLISQQQFDAIILDLNLPDGDGI
CEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCH
EACERWKAQCITSPIIMLTARSSLNERLNGFAVGADDYLVKPFAMEELVARLKVVAQRRL
HHHHHHHHHHHCCCEEEEEEHHHHHHHHCCEEECCCCCEECHHHHHHHHHHHHHHHHHHC
APQRLVIGELEIDFGNHRVYRQGQLLALPKTGWQILVLLARRSPETVSREEIERTIWPNS
CCCCEEEEEEEEECCCCEEEECCCEEEECCCCCEEEEEECCCCCCCCCHHHHHHHCCCCC
APDSDSLRSHIHLLRRVIDRPFERQILHTIRGVGLSLRDDINASS
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA